Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L22
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   195   3e-51
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   195   4e-51
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    52   5e-08
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    28   0.95 
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   3.8  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   5.1  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   6.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.9  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   8.9  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   8.9  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  195 bits (476), Expect = 3e-51
 Identities = 90/127 (70%), Positives = 102/127 (80%)
 Frame = +3

Query: 84  GVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKT 263
           GV+L+QLLD+  EQL++L H         GL       ++KLR+AK EAP NEKP  VKT
Sbjct: 28  GVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKT 87

Query: 264 HLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHS 443
           HLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHS
Sbjct: 88  HLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHS 147

Query: 444 SRFIPLK 464
           SRFIPLK
Sbjct: 148 SRFIPLK 154


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  195 bits (475), Expect = 4e-51
 Identities = 90/127 (70%), Positives = 102/127 (80%)
 Frame = +3

Query: 84  GVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKT 263
           GV+L+QLLD+  EQL++L H         GL       ++KLR+AK EAP NEKP  VKT
Sbjct: 27  GVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKT 86

Query: 264 HLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHS 443
           HLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHS
Sbjct: 87  HLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHS 146

Query: 444 SRFIPLK 464
           SRFIPLK
Sbjct: 147 SRFIPLK 153


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 23/49 (46%), Positives = 35/49 (71%)
 Frame = +3

Query: 255 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 401
           +KT +R+  I+P MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 50  IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 222 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 323
           K A P++KP +  THL +++I    VG  +  ++
Sbjct: 60  KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
 Frame = +3

Query: 291 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATH 440
           E+  + VG+YNGK  F +  + P+ +      H L E ++   KP++   PG+  TH
Sbjct: 23  EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH 79


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 321 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 407
           N +TF+  E   E     + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 427 LVPLTAPGSSHSSDVVQYTSRLRRH 501
           L+P TA GS H+  +VQ    + RH
Sbjct: 131 LLPSTATGSVHTRSIVQPIRYMLRH 155


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 83  SEGKLPECTFFLKSFIDLSHVSDF 12
           SEG L + T  LKS+ D S   DF
Sbjct: 443 SEGWLEDQTILLKSYFDTSFSLDF 466


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 174 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 269
           L R+P  + +K R   KEA PN    I++  L
Sbjct: 10  LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +3

Query: 216 AKKEAPPNEKPEIVKTHLRNMIIV----PEMVGSIVGIYNGKTFNQVEIKPEMIG 368
           A  E  P+  P+++ + L +  +     P + GS+  +Y    FN V++  +  G
Sbjct: 192 AASEISPSSSPQLLTSFLPSGSVSNPSSPYLQGSVGALYEADAFNFVDVMSQASG 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,207
Number of Sequences: 5004
Number of extensions: 43852
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)