Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L22
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   190   6e-49
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   174   3e-44
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573...    29   2.9  

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  190 bits (463), Expect = 6e-49
 Identities = 97/148 (65%), Positives = 108/148 (72%), Gaps = 21/148 (14%)
 Frame = +3

Query: 84  GVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA--------------- 218
           GVDLD LLDM  + L++L           GLKRKPMAL+KKLR+A               
Sbjct: 263 GVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNFEGTVFRLGFYE 322

Query: 219 ------KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLG 380
                 KK+AP  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL 
Sbjct: 323 AGSYFVKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLA 382

Query: 381 EFSVTYKPVKHGRPGIGATHSSRFIPLK 464
           EFS++YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 383 EFSISYKPVKHGRPGIGATHSSRFIPLK 410


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  174 bits (424), Expect = 3e-44
 Identities = 80/110 (72%), Positives = 91/110 (82%)
 Frame = +3

Query: 84  GVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKT 263
           GVDLD LLDM  + L++L           GLKRKPMAL+KKLR+AKK+AP  EKPE V+T
Sbjct: 135 GVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRT 194

Query: 264 HLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 413
           HLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKH
Sbjct: 195 HLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 244


>10_08_0165 +
           15356748-15356811,15357113-15357186,15357311-15357394,
           15357508-15357602,15357737-15357790,15357791-15357896,
           15358236-15358277,15358585-15358674,15358788-15358984,
           15359355-15359413,15360166-15362252
          Length = 983

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = -2

Query: 223 FLARRNFFTSAIGLRLSPRANRLRARACINSMSCSLGMSRS*SKSTPRKVNFLNVRFF-- 50
           +  R   F      + +   N+L    CI S+S S+G++R+ S +    +NF  V+F   
Sbjct: 208 YAERNTMFFIETSAKTADNINQL-FEVCIRSISESVGLNRNWSMTVETMINFSCVQFLSC 266

Query: 49  -LRVSSTSAMFLISFL 5
            LR   +SA  ++  L
Sbjct: 267 SLRAFISSAKLVLLHL 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,079
Number of Sequences: 37544
Number of extensions: 296761
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)