Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L20
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    98   6e-22
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    29   0.56 
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   1.7  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   3.9  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    26   3.9  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.0  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    25   9.0  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   9.0  

>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 98.3 bits (234), Expect = 6e-22
 Identities = 51/93 (54%), Positives = 62/93 (66%)
 Frame = +2

Query: 8   IHGTYLQNWPQIKLLGLSCMKRRHIHLAKGTYGDVSVISGSRKNVQVLIYIDLVKALNEG 187
           +HGT  + WP I   GLS MKR HIH A G YGD  VISG RK+  + IYID  KA+ +G
Sbjct: 132 VHGTKKELWPVISKQGLSRMKRNHIHCATGLYGDPGVISGIRKSCTLYIYIDSAKAMQDG 191

Query: 188 LKFFESDNGVILTAGNNQ*LLEPKYFLKAVEVS 286
           ++F+ S+NGVILT G N  LL  KYF + VE S
Sbjct: 192 VEFYRSENGVILTEGVNG-LLSSKYFSR-VETS 222


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
 Frame = -3

Query: 258 FGSNNHWLLPAVSITPLSDSKNFNPSFRALTRS------I*ISTCTFFLEPLITDTSPYV 97
           F SNN WL+   SI  LS  +    + + L  S      + +    FFL P I      +
Sbjct: 198 FHSNNAWLISFYSILALSSIRKRLGNSKTLAESLFSTAWVFVQKSDFFLTPSIDKVQALI 257

Query: 96  PLARCICLLFIQLRPRSFICGQFC 25
            + +    L      R+ +CGQ C
Sbjct: 258 VMTQYAAYLSSSSLCRT-LCGQAC 280


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 81  IC-LLFIQLRPRSFICGQFCKYVPCILV 1
           +C LLF +L P  F CG+F K +  + V
Sbjct: 430 VCRLLFNRLNPGKFYCGKFSKPISIVAV 457


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 273 QSKSAHVHSCIHDRWTRSVAQPVSLGSPSG 362
           + ++++ HS I D W   +AQ   + SP+G
Sbjct: 217 EKRASYGHSMIVDPWGTVIAQYSDISSPNG 246


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 134 KNVQVLIYIDLVKALNEGLKFFESDNGVILTAGNNQ*LLEPKYFLKAVEVS 286
           K+V+   Y  L + +   L FF+   G++ T  N+Q  L P+  +++ E S
Sbjct: 188 KDVEADQYQQLTELIVYELNFFKESTGILNTIFNSQNSLTPQKKIQSSERS 238


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 174 ALTRSI*ISTCT-FFLEPLITDTSPYVPLARCICLLFIQLRPRSFI 40
           ALT S  +++C+ FFL  L  D + +    RC    F QL  + F+
Sbjct: 267 ALTGSKFLASCSCFFLSALFHDFAYWSISGRCSPAFFFQLLIQPFL 312


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
 Frame = -3

Query: 216 TPLSDSKNFNPSFRALT----RSI*ISTCTFFL-EPL---ITDTSPYVPLARCICLL 70
           T + DS+ +NP+ RAL       I ++    +L +PL   + D  PYV  A  +C++
Sbjct: 94  TFVKDSEEYNPTLRALAIRTMGCIRVNKIIGYLADPLRKALKDEHPYVRKAAAVCVV 150


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 8   IHGTYLQNWPQIKLLGLSCMKRRHI 82
           ++GT + N PQ  +LGL  +K R +
Sbjct: 380 LYGTPIINLPQTAVLGLHAIKERPV 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,578
Number of Sequences: 5004
Number of extensions: 37151
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)