Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L20
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0240 - 1822086-1822216,1822311-1822367,1822788-1822842,182...    48   3e-06
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123     28   5.2  
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083...    27   6.9  
04_03_1025 + 21803807-21805249                                         27   6.9  

>06_01_0240 -
           1822086-1822216,1822311-1822367,1822788-1822842,
           1824585-1824674,1824848-1824995,1825095-1825351
          Length = 245

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/51 (47%), Positives = 36/51 (70%)
 Frame = +2

Query: 119 ISGSRKNVQVLIYIDLVKALNEGLKFFESDNGVILTAGNNQ*LLEPKYFLK 271
           +SG R++V +LIY+D+  AL +G+K + SDN VILT G +  ++  KYF K
Sbjct: 182 VSGMRQSVNILIYLDVSMALQDGMKLYISDNKVILTEGFDG-VVPVKYFEK 231


>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
          Length = 369

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 370 AREPLGEPSDTGCATLRVHLSWIQLCTCADFDC 272
           A  P  +  + GC TLRV L +I+    A F C
Sbjct: 173 ALTPRDQVLEIGCGTLRVGLHFIRFLEAAKFHC 205


>07_03_1584 +
           27907345-27907357,27907693-27908039,27908202-27908319,
           27908653-27908705,27908808-27908978,27909447-27909643,
           27909729-27909807,27909954-27909992,27910202-27910321,
           27910417-27910518,27910654-27910737,27910832-27911074,
           27911156-27911281,27911365-27911439,27911534-27911605,
           27911807-27911926,27912075-27912172,27912643-27912802,
           27912867-27912980,27913029-27913121,27913122-27913319,
           27913404-27913497,27914032-27914192
          Length = 958

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 288 VLTSTAFKKYFGSNNHWLLPAVSITPLSD 202
           VL S++FK++   N  WL P  +   L D
Sbjct: 365 VLNSSSFKQFLSENEEWLKPYAAFCFLRD 393


>04_03_1025 + 21803807-21805249
          Length = 480

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 339 PAALHFES--IYHGYNCAHVLTSTAFKKY 259
           PAALH  S  + + Y+C+H+L+  AF  +
Sbjct: 98  PAALHLASASLQYQYDCSHLLSLPAFPSH 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,136,439
Number of Sequences: 37544
Number of extensions: 238767
Number of successful extensions: 568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)