Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L20
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 20  YLQNWPQIKLLGLSCMKRRHIHLAKGTY-GDVSVISGSR 133
           Y+ NW  +  LG   M   +  +A G Y  D+S+   SR
Sbjct: 312 YMDNWKMMMYLGTPVMPDLNALIATGLYINDLSMHDFSR 350


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 417 NALHDPTPAPTTKLIVTGFP 476
           N  +DP    TT  +V GFP
Sbjct: 32  NVHNDPLVVETTSGLVRGFP 51


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 417 NALHDPTPAPTTKLIVTGFP 476
           N  +DP    TT  +V GFP
Sbjct: 32  NVHNDPLVVETTSGLVRGFP 51


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 190 QSFI*SFNQIDINQHLY 140
           + F  +FNQ +++Q+LY
Sbjct: 373 EDFYPTFNQTNVDQYLY 389


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 206 DNGVILTAGNNQ*LLEPKYFLKAVEVSTCAQLYP 307
           D GV    GNN  + +P+  +  ++     ++YP
Sbjct: 127 DTGVDDILGNNTVIHQPRIIIIDLKTDKILRIYP 160


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 271 SSRSQHMCTVVSMIDGL 321
           S  ++  C V+SM DGL
Sbjct: 158 SQANEGFCAVISMHDGL 174


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 271 SSRSQHMCTVVSMIDGL 321
           S  ++  C V+SM DGL
Sbjct: 153 SQANEGFCAVISMHDGL 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,777
Number of Sequences: 438
Number of extensions: 2479
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)