Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_L19
(276 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 101 2e-23
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 78 3e-16
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 78 3e-16
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 78 3e-16
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 78 3e-16
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 52 2e-08
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 29 0.12
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 27 0.65
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 27 0.65
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 2.6
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 24 3.5
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 4.6
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 24 4.6
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 24 4.6
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 23 6.1
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 23 6.1
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 23 6.1
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 23 6.1
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 23 6.1
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 23 8.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 23 8.0
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 23 8.0
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 23 8.0
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 101 bits (242), Expect = 2e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKE IPPDQQ
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ 117
Score = 101 bits (242), Expect = 2e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKE IPPDQQ
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ 193
Score = 101 bits (242), Expect = 2e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKE IPPDQQ
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ 269
Score = 101 bits (242), Expect = 2e-23
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKE IPPDQQ
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ 345
Score = 77.8 bits (183), Expect = 3e-16
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKE IPPDQQ
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ 41
Score = 36.7 bits (81), Expect = 6e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 50 LEDGRTLSDYNIQKES 65
Score = 36.7 bits (81), Expect = 6e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 126 LEDGRTLSDYNIQKES 141
Score = 36.7 bits (81), Expect = 6e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 202 LEDGRTLSDYNIQKES 217
Score = 36.7 bits (81), Expect = 6e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 278 LEDGRTLSDYNIQKES 293
Score = 36.7 bits (81), Expect = 6e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 354 LEDGRTLSDYNIQKES 369
Score = 28.7 bits (61), Expect = 0.16
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGM 117
+K TLHLVLRLRGG+
Sbjct: 366 QKESTLHLVLRLRGGL 381
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 236 KRLI*AGKQLEDG 274
+RLI AGKQLEDG
Sbjct: 41 QRLIFAGKQLEDG 53
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 236 KRLI*AGKQLEDG 274
+RLI AGKQLEDG
Sbjct: 117 QRLIFAGKQLEDG 129
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 236 KRLI*AGKQLEDG 274
+RLI AGKQLEDG
Sbjct: 193 QRLIFAGKQLEDG 205
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 236 KRLI*AGKQLEDG 274
+RLI AGKQLEDG
Sbjct: 269 QRLIFAGKQLEDG 281
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 236 KRLI*AGKQLEDG 274
+RLI AGKQLEDG
Sbjct: 345 QRLIFAGKQLEDG 357
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 77.8 bits (183), Expect = 3e-16
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKE IPPDQQ
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ 41
Score = 36.7 bits (81), Expect = 6e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 50 LEDGRTLSDYNIQKES 65
Score = 28.7 bits (61), Expect = 0.16
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGG-MQIFVKTLTGK 147
+K TLHLVLRLRGG ++ +K L K
Sbjct: 62 QKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 236 KRLI*AGKQLEDG 274
+RLI AGKQLEDG
Sbjct: 41 QRLIFAGKQLEDG 53
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 77.8 bits (183), Expect = 3e-16
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKE IPPDQQ
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ 41
Score = 36.7 bits (81), Expect = 6e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 50 LEDGRTLSDYNIQKES 65
Score = 28.7 bits (61), Expect = 0.16
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGG-MQIFVKTLTGK 147
+K TLHLVLRLRGG ++ +K L K
Sbjct: 62 QKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 236 KRLI*AGKQLEDG 274
+RLI AGKQLEDG
Sbjct: 41 QRLIFAGKQLEDG 53
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 77.8 bits (183), Expect = 3e-16
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKE IPPDQQ
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ 41
Score = 36.7 bits (81), Expect = 6e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 50 LEDGRTLSDYNIQKES 65
Score = 27.9 bits (59), Expect = 0.28
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGG 114
+K TLHLVLRLRGG
Sbjct: 62 QKESTLHLVLRLRGG 76
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 236 KRLI*AGKQLEDG 274
+RLI AGKQLEDG
Sbjct: 41 QRLIFAGKQLEDG 53
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 77.8 bits (183), Expect = 3e-16
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKE IPPDQQ
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ 41
Score = 36.7 bits (81), Expect = 6e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 50 LEDGRTLSDYNIQKES 65
Score = 27.9 bits (59), Expect = 0.28
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGG 114
+K TLHLVLRLRGG
Sbjct: 62 QKESTLHLVLRLRGG 76
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 236 KRLI*AGKQLEDG 274
+RLI AGKQLEDG
Sbjct: 41 QRLIFAGKQLEDG 53
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 51.6 bits (118), Expect = 2e-08
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
M I VKTLTGK I L+++P+D + +K ++++KE IPP QQ
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQ 41
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 29.1 bits (62), Expect = 0.12
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 142 GKTITLEVEPSDTIENVKAKIQDKECIPPDQQE 240
GK LE+EP++T +K ++ +PP++Q+
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQK 42
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 0.65
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 51 LSDYNIQKESYPPLGPSSERWNANICEDP 137
LSD +IQ S P+ P + +WN N C +P
Sbjct: 207 LSDSSIQLSSTSPVIPFTLKWN-NSCPNP 234
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 26.6 bits (56), Expect = 0.65
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = -2
Query: 179 VSDGSTSRVIVLPVRVFTN-ICIPPLRR--RTKWRVRFFLNVII 57
+ DG+ +R +P+R+F N + P R K+ VR++L++I+
Sbjct: 231 IMDGNPNRGETIPLRMFLNGYALTPTFRDVNKKFSVRYYLSLIL 274
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.6 bits (51), Expect = 2.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 220 CILCLGSWLLHSRWCLM 170
C CL +WL HS C M
Sbjct: 1112 CSFCLEAWLKHSSSCPM 1128
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 24.2 bits (50), Expect = 3.5
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Frame = +3
Query: 15 FLLESNLEDG------RTLSDYNIQKESYPPLGPSSERWNANICEDPHWQD 149
++L +N EDG + + D++I + L P S WN +I ++P+W++
Sbjct: 494 YILSTNEEDGEDERLAQAIQDFHILIQ-LNSLVPQSI-WNDDIWQEPYWKN 542
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 23.8 bits (49), Expect = 4.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 203 ILAFTFSMVSDGSTSRVIVLPVRVFT 126
ILAF F G+T V VLPV F+
Sbjct: 182 ILAFGFVNSFSGATDTVRVLPVSQFS 207
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 23.8 bits (49), Expect = 4.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3
Query: 202 SWLLHSRWCLMAPP 161
SW +H W L+ PP
Sbjct: 106 SWEIHDHWHLLLPP 119
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 23.8 bits (49), Expect = 4.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 144 ASEGLHKYLHSTSQTKDQVEGKILSECYNQKES 46
A E KY+ +Q ++ K++ E Y +KE+
Sbjct: 382 AEEMNQKYISEQTQLVEEALTKVMKEKYREKEN 414
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 23.4 bits (48), Expect = 6.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 48 TLSDYNIQKESYPPLGPSSERWNANICEDPHWQDYHP 158
T+ DYN Q +SY P S + P Q +HP
Sbjct: 135 TVQDYNPQVQSYCRPEPLSSNHVRSCPPFPPTQHHHP 171
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = +3
Query: 96 PSSERWNANICEDPHWQDYHP 158
P+ RWN D H +HP
Sbjct: 13 PTLSRWNPMFISDVHKISFHP 33
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -1
Query: 69 ECYNQKESGHLPSCFPAKISPSC 1
ECY E+ ++ +C K P C
Sbjct: 148 ECYEMAETEYVRACIMQKQVPKC 170
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 23.4 bits (48), Expect = 6.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 114 STSQTKDQVEGKILSECYNQKESGHLPSCFPAKISP 7
S S + + K+LS C PSC A ISP
Sbjct: 280 SNSDSPELSADKVLSHCSPIDARPSTPSCPNASISP 315
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 92 KWRVRFFLNVIIRKSPAIFQVAFQQKS 12
+WRVR ++ IRK+ + ++ F + S
Sbjct: 425 RWRVRLYIQSFIRKATS-YEALFLESS 450
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 168 AIRHHRECKSQDPRQRMHP 224
A +HHRE S + +Q+M P
Sbjct: 764 ASKHHREIISLNVKQKMDP 782
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 60 YNIQKESYP-PLGPSSERWNANICEDPHWQDYHP 158
Y K + P P+ PSS+ W+ ++ P Y P
Sbjct: 1850 YIPDKRNNPVPISPSSDTWDRDVEFYPSQNGYDP 1883
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 60 NQKESGHLPSCFPAKI 13
N+K + HL S FP+K+
Sbjct: 801 NEKVASHLMSVFPSKV 816
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 23.0 bits (47), Expect = 8.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1
Query: 19 CWKATWKMAGLFLIITF 69
CW +W+M L I F
Sbjct: 358 CWSTSWEMLSSLLAIDF 374
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,566
Number of Sequences: 5004
Number of extensions: 24423
Number of successful extensions: 111
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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