Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_L19
(276 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 103 1e-23
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 103 1e-23
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 103 1e-23
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 80 2e-16
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 80 2e-16
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 71 1e-13
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 56 5e-09
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 54 2e-08
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 37 0.002
AF040643-4|AAB94965.1| 110|Caenorhabditis elegans Hypothetical ... 29 0.62
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 27 1.4
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 27 1.4
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 27 1.4
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 27 1.4
L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome regu... 27 1.9
Z19156-2|CAE17940.2| 275|Caenorhabditis elegans Hypothetical pr... 26 3.3
AL021493-2|CAA16393.1| 382|Caenorhabditis elegans Hypothetical ... 26 3.3
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 26 4.4
Z78062-5|CAB01500.1| 516|Caenorhabditis elegans Hypothetical pr... 25 5.8
U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical pr... 25 5.8
U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related (... 25 5.8
AL021571-7|CAA16515.1| 516|Caenorhabditis elegans Hypothetical ... 25 5.8
Z81041-6|CAB02788.1| 336|Caenorhabditis elegans Hypothetical pr... 25 7.7
AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ... 25 7.7
AF040645-10|AAB94971.2| 110|Caenorhabditis elegans Hypothetical... 25 7.7
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 117
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 193
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 269
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 345
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 442 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 497
Score = 101 bits (242), Expect = 7e-23
Identities = 50/56 (89%), Positives = 51/56 (91%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTL GKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 421
Score = 80.2 bits (189), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 41
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 50 LEDGRTLSDYNIQKES 65
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 126 LEDGRTLSDYNIQKES 141
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 202 LEDGRTLSDYNIQKES 217
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 278 LEDGRTLSDYNIQKES 293
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 354 LEDGRTLSDYNIQKES 369
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 430 LEDGRTLSDYNIQKES 445
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 81 YPPLGPSSERWNANICEDPHWQDYHP*GGAIRHH 182
Y G S+R A++ +D W+++H G + HH
Sbjct: 505 YSSFGAPSQRRYADLRQDFDWKNHHSRGRSFGHH 538
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 117
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 193
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 269
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 345
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 442 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 497
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 518 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 573
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 594 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 649
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 670 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 725
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 746 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 801
Score = 101 bits (242), Expect = 7e-23
Identities = 50/56 (89%), Positives = 51/56 (91%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTL GKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 421
Score = 80.2 bits (189), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 41
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 50 LEDGRTLSDYNIQKES 65
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 126 LEDGRTLSDYNIQKES 141
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 202 LEDGRTLSDYNIQKES 217
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 278 LEDGRTLSDYNIQKES 293
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 354 LEDGRTLSDYNIQKES 369
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 430 LEDGRTLSDYNIQKES 445
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 506 LEDGRTLSDYNIQKES 521
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 582 LEDGRTLSDYNIQKES 597
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 658 LEDGRTLSDYNIQKES 673
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 734 LEDGRTLSDYNIQKES 749
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 810 LEDGRTLSDYNIQKES 825
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGG 114
+K TLHLVLRLRGG
Sbjct: 822 QKESTLHLVLRLRGG 836
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 117
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 193
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 269
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 345
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 421
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 442 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 497
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 518 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 573
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 594 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 649
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 670 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 725
Score = 103 bits (248), Expect = 1e-23
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+K TLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 746 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 801
Score = 80.2 bits (189), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 41
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 50 LEDGRTLSDYNIQKES 65
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 126 LEDGRTLSDYNIQKES 141
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 202 LEDGRTLSDYNIQKES 217
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 278 LEDGRTLSDYNIQKES 293
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 354 LEDGRTLSDYNIQKES 369
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 430 LEDGRTLSDYNIQKES 445
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 506 LEDGRTLSDYNIQKES 521
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 582 LEDGRTLSDYNIQKES 597
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 658 LEDGRTLSDYNIQKES 673
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 734 LEDGRTLSDYNIQKES 749
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQK+S
Sbjct: 810 LEDGRTLSDYNIQKQS 825
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGG 114
+K TLHLVLRLRGG
Sbjct: 822 QKQSTLHLVLRLRGG 836
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 80.2 bits (189), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 41
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 50 LEDGRTLSDYNIQKES 65
Score = 28.3 bits (60), Expect = 0.82
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGM 117
+K TLHLVLRLRGG+
Sbjct: 62 QKESTLHLVLRLRGGI 77
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 80.2 bits (189), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IPPDQQ
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ 41
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 33 LEDGRTLSDYNIQKES 80
LEDGRTLSDYNIQKES
Sbjct: 50 LEDGRTLSDYNIQKES 65
Score = 28.3 bits (60), Expect = 0.82
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 70 RKNLTLHLVLRLRGGM 117
+K TLHLVLRLRGG+
Sbjct: 62 QKESTLHLVLRLRGGI 77
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 70.9 bits (166), Expect = 1e-13
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIP 225
MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKE IP
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 55.6 bits (128), Expect = 5e-09
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
M I VKTLTGK I L++EP+D +E +K K+++KE IPP QQ
Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQ 41
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 53.6 bits (123), Expect = 2e-08
Identities = 23/52 (44%), Positives = 37/52 (71%)
Frame = +1
Query: 82 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQ 237
TL L + ++ + + VKTL GKTI + ++ +DT+E +K K+Q+K +PPDQQ
Sbjct: 150 TLRLEVPVKEKLTVSVKTLFGKTIPISIKNTDTVETLKFKVQNKHGVPPDQQ 201
Score = 30.3 bits (65), Expect = 0.20
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 216
M + VKT TGKTIT+E +NVK +++DK+
Sbjct: 59 MLLSVKTSTGKTITVEAP-----KNVKTEVRDKQ 87
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +1
Query: 112 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKECIPPDQQE 240
G++I+V+ G+T TL+ SDT+ +VKAKI +K I P+ Q+
Sbjct: 102 GIRIYVEN-AGRTCTLDTSASDTMASVKAKIWEKLRILPNTQK 143
Score = 33.1 bits (72), Expect = 0.029
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 64 TFRKNLTLHLVLRLRGGMQIFVKTLTGKTITLEV 165
+F TL L + + + +FVKT TGKTIT+ +
Sbjct: 164 SFENGSTLRLEVSIEKEIDVFVKTYTGKTITISI 197
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 216
M + +KT TGK IT+E S VK +++DK+
Sbjct: 1 MLLSIKTSTGKNITVEAPKS-----VKTEVRDKQ 29
>AF040643-4|AAB94965.1| 110|Caenorhabditis elegans Hypothetical
protein F14D2.11 protein.
Length = 110
Score = 28.7 bits (61), Expect = 0.62
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 118 QIFVKTLTGKTITLEVEPSDTIENVKAKI 204
Q FV+ L GKT TL V SDT+E K ++
Sbjct: 44 QYFVR-LNGKTRTLNVNASDTVEQGKMQL 71
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
protein C48B4.4c protein.
Length = 1704
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 42 GRTLSD-YNIQKESYPPLGPSSERWNANICEDPHW 143
G+T + +++ + SY P GPSS R++ P+W
Sbjct: 177 GKTPEETWHLTETSYNPYGPSSGRYSRIPSSPPYW 211
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
protein C48B4.4b protein.
Length = 1691
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 42 GRTLSD-YNIQKESYPPLGPSSERWNANICEDPHW 143
G+T + +++ + SY P GPSS R++ P+W
Sbjct: 177 GKTPEETWHLTETSYNPYGPSSGRYSRIPSSPPYW 211
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
protein C48B4.4a protein.
Length = 1689
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 42 GRTLSD-YNIQKESYPPLGPSSERWNANICEDPHW 143
G+T + +++ + SY P GPSS R++ P+W
Sbjct: 177 GKTPEETWHLTETSYNPYGPSSGRYSRIPSSPPYW 211
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 42 GRTLSD-YNIQKESYPPLGPSSERWNANICEDPHW 143
G+T + +++ + SY P GPSS R++ P+W
Sbjct: 177 GKTPEETWHLTETSYNPYGPSSGRYSRIPSSPPYW 211
>L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 3 protein.
Length = 504
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 165 HLKGDSLASEGLHKYLHSTSQTKDQVE 85
HL D+ +EG+ KYLH T +V+
Sbjct: 80 HLSSDAQFAEGMLKYLHYTPAADTEVQ 106
>Z19156-2|CAE17940.2| 275|Caenorhabditis elegans Hypothetical
protein T02C1.2 protein.
Length = 275
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 154 TLEVEPSDTIENVKAKIQDKECIPPDQQ 237
+L VE D IENV Q +PPD++
Sbjct: 229 SLVVEVIDEIENVPVNTQISPVMPPDEE 256
>AL021493-2|CAA16393.1| 382|Caenorhabditis elegans Hypothetical
protein Y51A2B.2 protein.
Length = 382
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 67 FRKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSD 177
F KNL + LVL L +V +T + LE+ SD
Sbjct: 19 FSKNLKIQLVLLLEHFQASYVLIITNFQLLLEISGSD 55
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 171 IRHHRECKSQDPRQRMHPS 227
+RH +C S DP Q + PS
Sbjct: 358 VRHFEDCMSNDPIQMIKPS 376
>Z78062-5|CAB01500.1| 516|Caenorhabditis elegans Hypothetical
protein F16D3.7 protein.
Length = 516
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -2
Query: 242 VSCWSGGMHSLSWILAFTFSMVSDGSTSRVIVLPVRVFTNICIP 111
V+ W G +S+ + ++F++ ++ +V+P+ F N C+P
Sbjct: 378 VASWLGYCNSMLNPIIYSFTVKEFKRSAFRLVVPIWQFVNRCLP 421
>U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical
protein T07H6.4 protein.
Length = 702
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 96 DQVEGKILSECYNQKESGHLPSCFP 22
+Q+ GK +CYN S +P C P
Sbjct: 353 EQLHGKKELQCYNGVWSSPIPYCIP 377
>U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related
(ectopic expressionof hox genes) protein 3 protein.
Length = 531
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 58 SERVRPSSKLLSSKNQPLV 2
S+RV+PS K+ KN PL+
Sbjct: 379 SDRVQPSPKIAKKKNGPLL 397
>AL021571-7|CAA16515.1| 516|Caenorhabditis elegans Hypothetical
protein F16D3.7 protein.
Length = 516
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -2
Query: 242 VSCWSGGMHSLSWILAFTFSMVSDGSTSRVIVLPVRVFTNICIP 111
V+ W G +S+ + ++F++ ++ +V+P+ F N C+P
Sbjct: 378 VASWLGYCNSMLNPIIYSFTVKEFKRSAFRLVVPIWQFVNRCLP 421
>Z81041-6|CAB02788.1| 336|Caenorhabditis elegans Hypothetical
protein C27A7.7 protein.
Length = 336
Score = 25.0 bits (52), Expect = 7.7
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = -2
Query: 212 LSWILAFTFSMVSDGSTSRVIVLPVRVFTNICIP--PLRRRTKWRVRFFLNVIIRKSPAI 39
L W + F M D T +V+P R N + PL T W +I+R S AI
Sbjct: 145 LLWFFSVYFLMWPDSETRSYLVIPFRRDYNADVHKIPLLASTYWGAS--TQLILRTSTAI 202
Query: 38 FQV 30
V
Sbjct: 203 IIV 205
>AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ion
channel protein 5 protein.
Length = 340
Score = 25.0 bits (52), Expect = 7.7
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 31 TWKMAGL--FLII-TFRKNLTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 201
+W + L FL++ TF N T + ++ ++ L +T + V+PSDT+ V
Sbjct: 2 SWLLNSLLTFLVLRTFGSNTT-----NVESNTEVLLQELFNRTYDVNVKPSDTLTTVTIT 56
Query: 202 IQDKECIPPDQ-QETDL 249
+ DQ QET L
Sbjct: 57 PNTFLLLSMDQTQETIL 73
>AF040645-10|AAB94971.2| 110|Caenorhabditis elegans Hypothetical
protein F52C6.2 protein.
Length = 110
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 115 MQIFVKTLTGKTITLEVEPS 174
M + +KT TGKTIT+E S
Sbjct: 1 MLLSIKTSTGKTITVEAPKS 20
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,057,173
Number of Sequences: 27780
Number of extensions: 139569
Number of successful extensions: 560
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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