Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L18
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.15 
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    27   2.4  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    26   3.2  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   4.2  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    25   5.6  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 1/121 (0%)
 Frame = +3

Query: 141 PLLTAQDCTVSSPMKPSATCSGTAGMVKLPATSAAPDLPTTENPVCACGLTKFRNARTKK 320
           P  T+   T SSP+  ++T   T+  +     S  P  PT      +  LT   N  T  
Sbjct: 373 PASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTT-TNCTTST 431

Query: 321 *RTVFLAPPRER-YQTLDPSAVTLTPKTAANITSVSRVWPASTVAPSVPFSRLVMLTAPA 497
                  P       T + +  T  P T+  +TS        T + S+P++   + + P 
Sbjct: 432 SVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPL 491

Query: 498 T 500
           T
Sbjct: 492 T 492



 Score = 29.9 bits (64), Expect = 0.26
 Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 4/136 (2%)
 Frame = +3

Query: 117 GHSLSLQLPLL-TAQDCTVSS---PMKPSATCSGTAGMVKLPATSAAPDLPTTENPVCAC 284
           G S SL  P+  T    + SS   P+ P++T S       LP TS +    T+  P    
Sbjct: 125 GGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTG-- 182

Query: 285 GLTKFRNARTKK*RTVFLAPPRERYQTLDPSAVTLTPKTAANITSVSRVWPASTVAPSVP 464
           G +      T    TV   PP     T  P   T T  T  N + +     + T + S+P
Sbjct: 183 GSSSLSTPITP---TV---PPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIP 236

Query: 465 FSRLVMLTAPATAKTP 512
                 L+ P T   P
Sbjct: 237 TGGSSSLSTPITPTVP 252



 Score = 29.5 bits (63), Expect = 0.34
 Identities = 29/128 (22%), Positives = 51/128 (39%)
 Frame = +3

Query: 117 GHSLSLQLPLLTAQDCTVSSPMKPSATCSGTAGMVKLPATSAAPDLPTTENPVCACGLTK 296
           G+S +   P +     + +S   P A+ S T        TS++P L T+ +   +  +  
Sbjct: 349 GNSTTPVTPTVPPTSTSSTSTPPPPASTSSTG-------TSSSPLLSTSTSCTTSTSIPP 401

Query: 297 FRNARTKK*RTVFLAPPRERYQTLDPSAVTLTPKTAANITSVSRVWPASTVAPSVPFSRL 476
             N+ T    TV          T + +  T  P T+  +TS        T + SVP++  
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTST 461

Query: 477 VMLTAPAT 500
            + + P T
Sbjct: 462 PVTSTPLT 469


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 345 PRERYQTLDPSAVTLTPKTAANITSVSRVWPASTVAPSVPFS 470
           P  R  + + +  T +P      TS    + AST++PS PFS
Sbjct: 355 PHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPSTPFS 396


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 501 QLPVPSASPILKTVPMGQP 445
           +LPVPS +PIL T P+  P
Sbjct: 56  KLPVPSTNPILTTEPIVGP 74


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +2

Query: 122 QLEPPITTPHCT---RLYGIFPDETKCDV 199
           QL  PI  PH     RLY +F +ETK D+
Sbjct: 280 QLHKPIFPPHWKVDFRLYEVFCEETKNDL 308


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 348 RERYQTLDP-SAVTLTPKTAANITSVSRVWPASTVAPSVPFSRLVMLTAPATAKT 509
           R +  T  P SA +  P   A++       P+STVA S   ++ V   AP+   T
Sbjct: 74  RPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSNPDT 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,394
Number of Sequences: 5004
Number of extensions: 54855
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)