Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L16
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    76   8e-15
Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z68010-3|CAA92011.1|  558|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z67756-4|CAA91765.1|  558|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z54327-13|CAE48494.1|  619|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z54307-9|CAE48498.1|  619|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF005246-1|AAB95119.1|  556|Caenorhabditis elegans voltage-depen...    29   1.6  
U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal prote...    27   3.6  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 76.2 bits (179), Expect = 8e-15
 Identities = 33/70 (47%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = +3

Query: 144 ISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNL-GNHVVIARDKTKVAINADI 320
           + LKF ++C +P ED IL + + E +L E++KV GKT +L  N+V +   K+KV++ +++
Sbjct: 19  VHLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSVVSEV 78

Query: 321 PFSKRYLKYL 350
           PFSKRYLKYL
Sbjct: 79  PFSKRYLKYL 88



 Score = 31.9 bits (69), Expect = 0.17
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 349 LTKRYLKKNHLRDWL 393
           LTK+YLK+N LRDWL
Sbjct: 88  LTKKYLKRNSLRDWL 102


>Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical
           protein R186.5 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
           ++  +CA+ G     LP+    +NFA FYS
Sbjct: 391 LIGSICALAGVLTIALPVPVIVSNFAMFYS 420


>Z68010-3|CAA92011.1|  558|Caenorhabditis elegans Hypothetical
           protein R07A4.1 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
           ++  +CAV G     LP+    +NFA FYS
Sbjct: 421 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 450


>Z67756-4|CAA91765.1|  558|Caenorhabditis elegans Hypothetical
           protein R07A4.1 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
           ++  +CAV G     LP+    +NFA FYS
Sbjct: 421 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 450


>Z54327-13|CAE48494.1|  619|Caenorhabditis elegans Hypothetical
           protein F14F11.1h protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
           ++  VCA+ G     LP+    +NFA FYS
Sbjct: 489 LVGSVCALMGVLTIALPVPVIVSNFAMFYS 518


>Z54307-9|CAE48498.1|  619|Caenorhabditis elegans Hypothetical
           protein F14F11.1h protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
           ++  VCA+ G     LP+    +NFA FYS
Sbjct: 489 LVGSVCALMGVLTIALPVPVIVSNFAMFYS 518


>AF005246-1|AAB95119.1|  556|Caenorhabditis elegans
           voltage-dependent potassium channelalpha subunit
           protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
           ++  +CAV G     LP+    +NFA FYS
Sbjct: 419 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 448


>U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform b protein.
          Length = 53

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 144 ISLKFTIDCTHPAEDSILDV 203
           + LKF ++C +P ED IL +
Sbjct: 19  VHLKFNVECKNPVEDGILRI 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,177,240
Number of Sequences: 27780
Number of extensions: 180627
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)