Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L15
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    26   3.1  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   4.2  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   4.2  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    25   5.5  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   5.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   7.3  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   7.3  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    24   9.6  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    24   9.6  

>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 323 HFLNFWLSFRLCQLISGTAKPILL 394
           HFL+ WL FR   L  G   PI++
Sbjct: 93  HFLSEWLLFRTTNLGPGLLSPIVV 116


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -2

Query: 374 FRRLAGTNEKRAKNL-KNVFLLSYVHSYDLCKK 279
           F+RL+G +EK+AK   K + LL+   ++++ KK
Sbjct: 154 FKRLSGADEKKAKEEDKRIRLLAKRTAWEIRKK 186


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 344 RAKNLKNVFLLSYVHSYDLCKKLLFRHYKQTL 249
           + KNLKN     +   + LC ++L R  K +L
Sbjct: 178 KTKNLKNQMCGEFAEIFQLCSQILERAQKPSL 209


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 353 NEKRAKNLKNVFLLSYVHSYDLCKK 279
           NE++AK LK+  L +Y H+ D  ++
Sbjct: 153 NEQQAKELKDAGLTAYNHNLDTSRE 177


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 268 RNNNFLHKSYECTYDNKNTFFKFL 339
           R+N++ H++Y+     +  FFKFL
Sbjct: 179 RSNDYQHENYDTYEAAERAFFKFL 202


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 270  STLQTDTSILFISIDDTYHVSPYIYLINS 184
            S ++ D  I  + ID TY ++ Y Y+I +
Sbjct: 1198 SNVEEDDPIEVVIIDQTYFINVYKYVIGN 1226


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 239 NKIEVSVCNVEITIFYINHMNVHTITKIHFLNFWLSFRL 355
           N+I  S    E   F   H  ++TIT +  L+ W++  L
Sbjct: 183 NRIITSTLASEYAYFIRPHGTLYTITDVEELHVWMAQHL 221


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 263 NVEITIFYINHMNVHTITKIHFLNFWLSFRLCQLISGTAKPILLFV*QQSEVTSRKFFE 439
           +V+++ F +   +   I K  F +F+L   L   ++G A P  L   Q   +   K+F+
Sbjct: 174 SVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAMHLAGVATPENLKCAQDILIILGKYFQ 232


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 342 SQKFKKCIFVIVCTFI*FM*KI-VISTLQTDT 250
           ++ FKKC+F  +  FI  +  +  +S LQ DT
Sbjct: 16  NRNFKKCLFACISIFIFALLALSFLSLLQPDT 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,838
Number of Sequences: 5004
Number of extensions: 31827
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)