Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L15
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z71185-6|CAI46563.1|  286|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    27   8.6  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 371 RRLAGTNEKRAKNLKNVFLLSYVHSYDLCKKLLFRH 264
           + L G+NE R +    +F LSY + +DL  + + RH
Sbjct: 533 KELIGSNEDRIREFTGMFDLSY-YGWDLKAERIARH 567


>Z71185-6|CAI46563.1|  286|Caenorhabditis elegans Hypothetical
           protein C35A5.10 protein.
          Length = 286

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 378 LNQFYCLSNNNLKLHRANFSKIGSRV 455
           ++Q+ C SNNN   +  NF+  G++V
Sbjct: 40  VSQYPCNSNNNCNNNNCNFNNYGNQV 65


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 280 FLHKSYECTYDNKNTFFKFL 339
           F H S EC  DN NT F+ L
Sbjct: 55  FQHLSQECFLDNSNTDFRIL 74


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 280 FLHKSYECTYDNKNTFFKFL 339
           F H S EC  DN NT F+ L
Sbjct: 55  FQHLSQECFLDNSNTDFRIL 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,641,989
Number of Sequences: 27780
Number of extensions: 176219
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)