Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L15
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   4.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.3  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +1

Query: 271 NNNFLHKSYECTYDNKNTFFKFL 339
           +NN+ +K+Y   Y++K  ++  +
Sbjct: 306 SNNYNYKNYNNNYNSKKLYYNII 328


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +1

Query: 271 NNNFLHKSYECTYDNKNTFFKFL 339
           +NN+ +K+Y   Y++K  ++  +
Sbjct: 317 SNNYNYKNYNNNYNSKKLYYNII 339


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 402 NNNLKLHRANFSKIGSRV 455
           NN+L L   NF  +G+ V
Sbjct: 388 NNDLNLEHVNFQILGANV 405


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 271 NNNFLHKSYECTYDNKN 321
           NNN+ + +Y   Y+N N
Sbjct: 326 NNNYNNNNYNNNYNNYN 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,294
Number of Sequences: 438
Number of extensions: 2189
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)