Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L14
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    29   0.37 
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    29   0.49 
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    29   0.49 
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    28   0.86 
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    25   8.0  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   8.0  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 10  VVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQI 129
           VV + +   A +CSKY PSIP      +TR  Q   QS +
Sbjct: 407 VVLSTSGNTARLCSKYRPSIP---IVMVTRCPQRARQSHL 443


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 127 IAAKLGVPVRDVKRVIIWGNHSSTQFPDASNAVATIGG---VEKSVPEAIND 273
           +A + G+P  +V+ V  + NH  +  P  S   ++IG    VEK V  +I D
Sbjct: 639 LARRRGLPRLEVRGVAAFTNHLESSHPPISTVDSSIGSASVVEKGVANSIVD 690


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 11/106 (10%)
 Frame = +1

Query: 22  PANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQI---------AAKLGVPVRDVKRVI 174
           P N+N    S    SIP    T       N AQS +         A KLG      K  +
Sbjct: 240 PPNSNNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLTARKLGFASSQTKSAV 299

Query: 175 IWGNHSSTQFPDASNAVATIGGVEKSVPEAINDEDYL--KNSFVTT 306
              NHS     DAS  + +     +S P+   +E  L   NS V +
Sbjct: 300 S-NNHSRNSSKDASFMMKSFIPSNRSHPQTQQNESSLFSDNSMVNS 344


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +1

Query: 67  IPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVIIWGNHSSTQFPDASNAVATIGGVE 246
           +P +N+T  + L+ N+    +  + G+    + R++I  +   ++    S      G V 
Sbjct: 202 LPSQNYTPPS-LEPNKLDEGMFLE-GIGAGGIGRILI-ADFGFSKVVWNSKTATPCGTVG 258

Query: 247 KSVPEAINDEDYLKN 291
            + PE +NDE Y KN
Sbjct: 259 YAAPEIVNDELYSKN 273


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 71  GIEGAYFEQIKALVLAGFPTT 9
           GI GAY E +  ++++G P T
Sbjct: 94  GIGGAYAEDLPVILISGSPNT 114


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 217 NAVATIGGVEKSVPEAINDEDYL 285
           N +A +GG+ + + + IN +DY+
Sbjct: 269 NIIAALGGINRILSQHINVKDYV 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,908
Number of Sequences: 5004
Number of extensions: 34472
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)