Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L14
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical ...   162   1e-40
AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical ...   140   4e-34
AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical ...   126   6e-30
AF003140-10|AAD47121.2|  419|Caenorhabditis elegans Hypothetical...    32   0.19 
M77697-1|AAA27896.3|  273|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF038605-5|AAB92019.1|  211|Caenorhabditis elegans Hypothetical ...    28   4.1  
AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p...    27   9.5  
U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormon...    27   9.5  

>AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical
           protein F46E10.10a protein.
          Length = 336

 Score =  162 bits (394), Expect = 1e-40
 Identities = 79/160 (49%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
 Frame = +1

Query: 10  VVGNPANTNALICSKYAPS-IPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVIIWGN 186
           VVGNPANTNA I +KYA   IP +NF+AMTRLD NRA +Q+A K G  + +VK VIIWGN
Sbjct: 128 VVGNPANTNAFIAAKYAAGKIPAKNFSAMTRLDHNRALAQLALKTGTTIGNVKNVIIWGN 187

Query: 187 HSSTQFPDASNAVATIGGVEKSVPEAINDEDYLKNSFVTTVQKRGAAVIXXXXXXXXXXX 366
           HS TQFPD ++A     G E     A+ D  +L+  F+ TVQKRG  +I           
Sbjct: 188 HSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVIIEKRKLSSAMSA 247

Query: 367 XXXXXDHMRDWFLGT-GDCWVSMGVVSDGSYGTPRDVVFS 483
                DH+ DW  GT    +VSM V SDGSYG P+ ++FS
Sbjct: 248 AKAACDHIHDWHFGTKAGQFVSMAVPSDGSYGIPQGLIFS 287


>AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical
           protein F46E10.10b protein.
          Length = 273

 Score =  140 bits (340), Expect = 4e-34
 Identities = 66/135 (48%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
 Frame = +1

Query: 10  VVGNPANTNALICSKYAPS-IPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVIIWGN 186
           VVGNPANTNA I +KYA   IP +NF+AMTRLD NRA +Q+A K G  + +VK VIIWGN
Sbjct: 128 VVGNPANTNAFIAAKYAAGKIPAKNFSAMTRLDHNRALAQLALKTGTTIGNVKNVIIWGN 187

Query: 187 HSSTQFPDASNAVATIGGVEKSVPEAINDEDYLKNSFVTTVQKRGAAVIXXXXXXXXXXX 366
           HS TQFPD ++A     G E     A+ D  +L+  F+ TVQKRG  +I           
Sbjct: 188 HSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVIIEKRKLSSAMSA 247

Query: 367 XXXXXDHMRDWFLGT 411
                DH+ DW  GT
Sbjct: 248 AKAACDHIHDWHFGT 262


>AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical
           protein F46E10.10c protein.
          Length = 181

 Score =  126 bits (305), Expect = 6e-30
 Identities = 60/132 (45%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
 Frame = +1

Query: 91  MTRLDQNRAQSQIAAKLGVPVRDVKRVIIWGNHSSTQFPDASNAVATIGGVEKSVPEAIN 270
           MTRLD NRA +Q+A K G  + +VK VIIWGNHS TQFPD ++A     G E     A+ 
Sbjct: 1   MTRLDHNRALAQLALKTGTTIGNVKNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVG 60

Query: 271 DEDYLKNSFVTTVQKRGAAVIXXXXXXXXXXXXXXXXDHMRDWFLGT-GDCWVSMGVVSD 447
           D  +L+  F+ TVQKRG  +I                DH+ DW  GT    +VSM V SD
Sbjct: 61  DNAFLQGPFIATVQKRGGVIIEKRKLSSAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSD 120

Query: 448 GSYGTPRDVVFS 483
           GSYG P+ ++FS
Sbjct: 121 GSYGIPQGLIFS 132


>AF003140-10|AAD47121.2|  419|Caenorhabditis elegans Hypothetical
           protein C44E4.3 protein.
          Length = 419

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 338 AAITAAPRF*TVVTKLFFK*SSSLIASGTDFSTPPIVAT-ALDASGNWVEE*LP 180
           + IT  P F  +  KL F  +S +I  G  F+T  I  T AL   G +VE+ +P
Sbjct: 87  STITGVPEFAPLAAKLAFGDNSEVIRDGRVFTTQSISGTGALRIGGQFVEKFIP 140


>M77697-1|AAA27896.3|  273|Caenorhabditis elegans Hypothetical
           protein B0303.2 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 106 QNRAQSQIAAKLGVPVRD--VKRVIIWGNHSSTQFPDASNAVATIGGVEKS 252
           QN+ +  + A L V V +  V + I+W  +   Q PD    V+T+  +E S
Sbjct: 138 QNKTRKLMRAVLDVNVHESPVVQSIVWKENEQVQVPDKFQVVSTVFCLEYS 188


>AF038605-5|AAB92019.1|  211|Caenorhabditis elegans Hypothetical
           protein C02B10.4 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = +1

Query: 70  PKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVIIWGNHSSTQFPDASNAVATIGGVEK 249
           PK+NFT   R   N      AA  G+  R++    I G  +     +     +T+  + K
Sbjct: 41  PKQNFTTKRRAQTNFVTKAGAAAAGLATRNISTASIRGRTAPAVVREIHTGPSTL--IIK 98

Query: 250 SVPEAINDED 279
           ++   +  ED
Sbjct: 99  NLATTVTQED 108


>AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.7 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 178 WGNHSSTQFPDASNAVATIGGVEKSVPEAINDEDYLKNSFVTTVQK 315
           W       FP++++ +  IGG + S  +   DED  + + V   +K
Sbjct: 563 WNRMFCKYFPESADGIVKIGGFKISCCDMEEDEDVEERTLVVQYEK 608


>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 10  VVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQIAAK 138
           +V  P++T +   + +A S PK    A TRL  +   S+ +++
Sbjct: 59  IVNTPSSTASHCTNSFATSTPKSKSNASTRLGSSYGSSRSSSQ 101


>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 10  VVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQIAAK 138
           +V  P++T +   + +A S PK    A TRL  +   S+ +++
Sbjct: 59  IVNTPSSTASHCTNSFATSTPKSKSNASTRLGSSYGSSRSSSQ 101


>U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 9 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 156 SNRHS*FCSNLGLS-TVLIKACHCCKVFFR 70
           S R    CS LG S    + +C+ CK+FFR
Sbjct: 10  SERRCAICSKLGNSYNYGVLSCNACKMFFR 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,087
Number of Sequences: 27780
Number of extensions: 200659
Number of successful extensions: 642
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)