Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_L13
(431 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 122 1e-28
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 122 1e-28
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 122 1e-28
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 117 3e-27
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 97 4e-21
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 73 1e-13
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 73 1e-13
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 58 2e-09
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 40 0.001
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.009
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.009
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.009
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 34 0.038
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.038
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 34 0.038
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.088
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 32 0.15
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 32 0.15
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 31 0.27
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 0.27
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 1.9
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 29 1.9
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 28 3.3
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 28 3.3
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 28 3.3
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 27 4.4
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 122 bits (293), Expect = 1e-28
Identities = 56/76 (73%), Positives = 58/76 (76%)
Frame = +2
Query: 203 EAHEMGKGSFKYAWVLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXX 382
EA EMGKGSFKYAWVLDKL AERERGIT DIALWKFET KYY+TIIDA GHRD
Sbjct: 45 EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMIT 104
Query: 383 XXXXXDCAVLIVAAGT 430
DCAVL+VA GT
Sbjct: 105 GTSQADCAVLVVACGT 120
Score = 103 bits (246), Expect = 7e-23
Identities = 59/109 (54%), Positives = 66/109 (60%)
Frame = +1
Query: 70 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK*SP*NG*GFLQIRLGI 249
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK + G G + +
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 250 GQTKCRA*AWYHHRYCSLEVRNRQILCHHHRRSWTQRFIKNMITGTSQA 396
+ K + + + FIKNMITGTSQA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 122 bits (293), Expect = 1e-28
Identities = 56/76 (73%), Positives = 58/76 (76%)
Frame = +2
Query: 203 EAHEMGKGSFKYAWVLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXX 382
EA EMGKGSFKYAWVLDKL AERERGIT DIALWKFET KYY+TIIDA GHRD
Sbjct: 45 EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMIT 104
Query: 383 XXXXXDCAVLIVAAGT 430
DCAVL+VA GT
Sbjct: 105 GTSQADCAVLVVACGT 120
Score = 103 bits (246), Expect = 7e-23
Identities = 59/109 (54%), Positives = 66/109 (60%)
Frame = +1
Query: 70 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK*SP*NG*GFLQIRLGI 249
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK + G G + +
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 250 GQTKCRA*AWYHHRYCSLEVRNRQILCHHHRRSWTQRFIKNMITGTSQA 396
+ K + + + FIKNMITGTSQA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 122 bits (293), Expect = 1e-28
Identities = 56/76 (73%), Positives = 58/76 (76%)
Frame = +2
Query: 203 EAHEMGKGSFKYAWVLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXX 382
EA EMGKGSFKYAWVLDKL AERERGIT DIALWKFET KYY+TIIDA GHRD
Sbjct: 45 EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMIT 104
Query: 383 XXXXXDCAVLIVAAGT 430
DCAVL+VA GT
Sbjct: 105 GTSQADCAVLVVACGT 120
Score = 103 bits (246), Expect = 7e-23
Identities = 59/109 (54%), Positives = 66/109 (60%)
Frame = +1
Query: 70 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK*SP*NG*GFLQIRLGI 249
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK + G G + +
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 250 GQTKCRA*AWYHHRYCSLEVRNRQILCHHHRRSWTQRFIKNMITGTSQA 396
+ K + + + FIKNMITGTSQA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 117 bits (282), Expect = 3e-27
Identities = 54/73 (73%), Positives = 56/73 (76%)
Frame = +2
Query: 203 EAHEMGKGSFKYAWVLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXX 382
EA EMGKGSFKYAWVLDKL AERERGIT DIALWKFET KYY+TIIDA GHRD
Sbjct: 45 EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMIT 104
Query: 383 XXXXXDCAVLIVA 421
DCAVL+VA
Sbjct: 105 GTSQADCAVLVVA 117
Score = 103 bits (246), Expect = 7e-23
Identities = 59/109 (54%), Positives = 66/109 (60%)
Frame = +1
Query: 70 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK*SP*NG*GFLQIRLGI 249
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK + G G + +
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 250 GQTKCRA*AWYHHRYCSLEVRNRQILCHHHRRSWTQRFIKNMITGTSQA 396
+ K + + + FIKNMITGTSQA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 97.5 bits (232), Expect = 4e-21
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +1
Query: 70 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 201
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 44
Score = 43.2 bits (97), Expect = 8e-05
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +2
Query: 203 EAHEMGKGSFKYAWVLDKLNAER 271
EA EMGKGSFKYAWVLDKL +
Sbjct: 45 EAQEMGKGSFKYAWVLDKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 72.5 bits (170), Expect = 1e-13
Identities = 34/78 (43%), Positives = 43/78 (55%)
Frame = +2
Query: 197 RSEAHEMGKGSFKYAWVLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXX 376
+ EA GK SF YAWVLD+ ERERG+T DI FET + ++DA GH+D
Sbjct: 206 KHEAARNGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNM 265
Query: 377 XXXXXXXDCAVLIVAAGT 430
D A+L+V A T
Sbjct: 266 ITGTSQADAAILVVNATT 283
Score = 58.4 bits (135), Expect = 2e-09
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Frame = +1
Query: 79 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK*SP*NG*GFLQIRLGIGQT 258
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ + NG + +T
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 259 KCRA*AWYHHRYCSLEVRNRQILCHHHR-----RSWTQRFIKNMITGTSQA 396
+ R ++++ H R + FI NMITGTSQA
Sbjct: 227 EEE-----RERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQA 272
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 72.5 bits (170), Expect = 1e-13
Identities = 34/78 (43%), Positives = 43/78 (55%)
Frame = +2
Query: 197 RSEAHEMGKGSFKYAWVLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXX 376
+ EA GK SF YAWVLD+ ERERG+T DI FET + ++DA GH+D
Sbjct: 224 KHEAARNGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNM 283
Query: 377 XXXXXXXDCAVLIVAAGT 430
D A+L+V A T
Sbjct: 284 ITGTSQADAAILVVNATT 301
Score = 58.4 bits (135), Expect = 2e-09
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Frame = +1
Query: 79 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK*SP*NG*GFLQIRLGIGQT 258
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ + NG + +T
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 259 KCRA*AWYHHRYCSLEVRNRQILCHHHR-----RSWTQRFIKNMITGTSQA 396
+ R ++++ H R + FI NMITGTSQA
Sbjct: 245 EEE-----RERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQA 290
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 58.4 bits (135), Expect = 2e-09
Identities = 24/43 (55%), Positives = 33/43 (76%)
Frame = +1
Query: 73 GKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 201
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYER 146
Score = 55.6 bits (128), Expect = 1e-08
Identities = 27/74 (36%), Positives = 41/74 (55%)
Frame = +2
Query: 203 EAHEMGKGSFKYAWVLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXX 382
EA E G+ S+ +W +D + ERE+G T ++ FET K + TI+DA GH+
Sbjct: 147 EAKEKGRESWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIV 206
Query: 383 XXXXXDCAVLIVAA 424
D AVL+++A
Sbjct: 207 GANQADLAVLVISA 220
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/60 (36%), Positives = 27/60 (45%)
Frame = +2
Query: 245 VLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXXXXXXXDCAVLIVAA 424
+LDKL ERERGIT Y + +ID GH D D +L+VAA
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAA 135
Score = 30.7 bits (66), Expect = 0.47
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 94 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFE 198
N ++ HVD GKST L+ CG + K+ ++K +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQ 81
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.3 bits (80), Expect = 0.009
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 248 LDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXXXXXXXDCAVLIVAA 424
+D E+ RGIT + ++ET K + ID GH D + A+L+VAA
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAA 145
Score = 32.7 bits (71), Expect = 0.12
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 76 KEKVHINIVVIGHVDSGKSTTT 141
++K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.009
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 248 LDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXXXXXXXDCAVLIVAA 424
+D E+ RGIT + ++ET K + ID GH D + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAA 146
Score = 32.7 bits (71), Expect = 0.12
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 76 KEKVHINIVVIGHVDSGKSTTT 141
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.009
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 248 LDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXXXXXXXDCAVLIVAA 424
+D E+ RGIT + ++ET K + ID GH D + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAA 146
Score = 32.7 bits (71), Expect = 0.12
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 76 KEKVHINIVVIGHVDSGKSTTT 141
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 34.3 bits (75), Expect = 0.038
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 248 LDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXXXXXXXDCAVLIVAA 424
+DK E++RGIT ++A +E+ + D GH D D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAA 141
Score = 30.3 bits (65), Expect = 0.62
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 82 KVHINIVVIGHVDSGKSTTT 141
K+++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.038
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 94 NIVVIGHVDSGKSTTTGHLIYKCGGI 171
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
Score = 31.9 bits (69), Expect = 0.20
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 245 VLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRD 361
V D L+ ERERGIT A + + + +ID GH D
Sbjct: 64 VTDFLDIERERGITVQSAAVNLDWKGHRINLIDTPGHVD 102
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 34.3 bits (75), Expect = 0.038
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 248 LDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXXXXXXXDCAVLIVAA 424
+DK E++RGIT ++A +E+ + D GH D D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAA 141
Score = 30.3 bits (65), Expect = 0.62
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 82 KVHINIVVIGHVDSGKSTTT 141
K+++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.088
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 94 NIVVIGHVDSGKSTTTGHLIYKCGGID 174
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 32.3 bits (70), Expect = 0.15
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +2
Query: 209 HEMGKGSFKYAWVLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXXXX 388
HE+ +G +D ++ ER+RGIT A + + IID GH D
Sbjct: 75 HEV-RGKDDVGATMDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERAL 133
Query: 389 XXXDCAVLIV 418
D AVL++
Sbjct: 134 RVLDGAVLVL 143
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 49 VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 156
+IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 49 VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 156
+IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.27
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 94 NIVVIGHVDSGKSTTTGHLIYKCG 165
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.27
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 94 NIVVIGHVDSGKSTTTGHLIYKCG 165
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 91 INIVVIGHVDSGKSTTT 141
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 91 INIVVIGHVDSGKSTTT 141
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 242 WVLDKLNAERERGITTDIALWKFETGKYYVTII 340
W+++KL R +T+ W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 242 WVLDKLNAERERGITTDIALWKFETGKYYVTII 340
W+++KL R +T+ W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 242 WVLDKLNAERERGITTDIALWKFETGKYYVTII 340
W+++KL R +T+ W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 333 PSSTLVDTEIHQEHDHWNVSGLTAP 407
P +L DTEI+ EH H T+P
Sbjct: 45 PVGSLTDTEIYTEHSHQTTVAKTSP 69
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 333 PSSTLVDTEIHQEHDHWNVSGLTAP 407
P +L DTEI+ EH H T+P
Sbjct: 45 PVGSLTDTEIYTEHSHQTTVAKTSP 69
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 333 PSSTLVDTEIHQEHDHWNVSGLTAP 407
P +L DTEI+ EH H T+P
Sbjct: 45 PVGSLTDTEIYTEHSHQTTVAKTSP 69
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 16 GTMLSRIYTLIVIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKC 162
G+ R +++R P+ ++ + + + V+G D GKST G L C
Sbjct: 145 GSNSRRTVVEVLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGC 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,750,709
Number of Sequences: 27780
Number of extensions: 181673
Number of successful extensions: 587
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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