Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L13
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   124   4e-31
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   122   2e-30
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   100   1e-23
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    71   7e-15
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.36 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.48 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.63 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   3.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.8  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  124 bits (299), Expect = 4e-31
 Identities = 59/76 (77%), Positives = 59/76 (77%)
 Frame = +2

Query: 203 EAHEMGKGSFKYAWVLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXX 382
           EA EMGKGSFKYAWVLDKL AERERGIT DIALWKFET KYYVTIIDA GHRD       
Sbjct: 45  EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMIT 104

Query: 383 XXXXXDCAVLIVAAGT 430
                DCAVLIVAAGT
Sbjct: 105 GTSQADCAVLIVAAGT 120



 Score =  102 bits (245), Expect = 1e-24
 Identities = 58/109 (53%), Positives = 66/109 (60%)
 Frame = +1

Query: 70  MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK*SP*NG*GFLQIRLGI 249
           MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK +   G G  +    +
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 250 GQTKCRA*AWYHHRYCSLEVRNRQILCHHHRRSWTQRFIKNMITGTSQA 396
            + K              +    +           + FIKNMITGTSQA
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 109


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  122 bits (294), Expect = 2e-30
 Identities = 58/75 (77%), Positives = 58/75 (77%)
 Frame = +2

Query: 203 EAHEMGKGSFKYAWVLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXX 382
           EA EMGKGSFKYAWVLDKL AERERGIT DIALWKFET KYYVTIIDA GHRD       
Sbjct: 45  EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMIT 104

Query: 383 XXXXXDCAVLIVAAG 427
                DCAVLIVAAG
Sbjct: 105 GTSQADCAVLIVAAG 119



 Score =  102 bits (245), Expect = 1e-24
 Identities = 58/109 (53%), Positives = 66/109 (60%)
 Frame = +1

Query: 70  MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK*SP*NG*GFLQIRLGI 249
           MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK +   G G  +    +
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 250 GQTKCRA*AWYHHRYCSLEVRNRQILCHHHRRSWTQRFIKNMITGTSQA 396
            + K              +    +           + FIKNMITGTSQA
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQA 109


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 99.5 bits (237), Expect = 1e-23
 Identities = 47/63 (74%), Positives = 47/63 (74%)
 Frame = +2

Query: 242 WVLDKLNAERERGITTDIALWKFETGKYYVTIIDARGHRDXXXXXXXXXXXXDCAVLIVA 421
           WVLDKL AERERGIT DIALWKFET KYYVTIIDA GHRD            DCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 422 AGT 430
           AGT
Sbjct: 61  AGT 63


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 70.5 bits (165), Expect = 7e-15
 Identities = 33/47 (70%), Positives = 33/47 (70%)
 Frame = +2

Query: 290 DIALWKFETGKYYVTIIDARGHRDXXXXXXXXXXXXDCAVLIVAAGT 430
           DIALWKFET KYYVTIIDA GHRD            DCAVLIVAAGT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 47


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 315 PANTMSPSSTLVDTEIHQEHD 377
           P+++ SPS +L+ ++ HQ+H+
Sbjct: 38  PSSSRSPSPSLLTSQPHQDHN 58


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 82  KVHINIVVIGHVDSGKST 135
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160



 Score = 22.6 bits (46), Expect = 1.9
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +2

Query: 278 GITTDIALWK--FETGKYYVTIIDARGHRDXXXXXXXXXXXXDCAVLIVAA 424
           GIT  I  +    E+G+  VT +D  GH              D  VL+VAA
Sbjct: 177 GITQCIGAFDVTLESGER-VTFLDTPGHAAFISMRHRGAHITDIVVLVVAA 226


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 91  INIVVIGHVDSGKST 135
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 298 SLEVRNRQILCHHHRRSWTQRFIKNMI 378
           SLE R R+   H  + S  QRF++  +
Sbjct: 99  SLEERERKHAVHKEQLSREQRFLRRRL 125


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 158 NAVVSTNVPSKSSRSEAHEMGKGSFKYAWVLDKLNAERERGITTDIALWKFETGKYYVTI 337
           N +++TNV  +   ++ +++      Y  V D L+   E     DI L+    G Y VTI
Sbjct: 64  NQIMTTNVWVEQEWND-YKLKWNPDDYGGV-DTLHVPSEHIWLPDIVLYNNADGNYEVTI 121

Query: 338 I 340
           +
Sbjct: 122 M 122


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 187 RWYVCRYHRIC 155
           RW + ++HR+C
Sbjct: 186 RWDLGKFHRVC 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,492
Number of Sequences: 438
Number of extensions: 2301
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)