Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_L11
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 31 0.16
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 0.84
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 28 1.1
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 1.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 27 2.6
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 25 7.9
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 25 7.9
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 7.9
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 7.9
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 30.7 bits (66), Expect = 0.16
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 451 SVGFGSADLGSGVFSSALTLSSGFGFVSSGCLVSASAGA 335
S GFGS G G+F S+ T ++ F +SG VS++A A
Sbjct: 137 STGFGSQGTGGGLFGSSTTPATTNAFGTSG-FVSSNANA 174
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 0.84
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -3
Query: 359 FGLSFCWCFFTFGLRYFFFSFWSRIGFLFLFRNGMLCFSGFCVSYRSRLSNQFLF 195
F SF + FF + +FS + + FLF F + F F S LS LF
Sbjct: 129 FSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILF 183
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 367 KRQNQNQMIKSKQMKRHLNLNLQNQSLPTFLLNLNQKRSPRIV 495
K N + K+ +RH ++ PT + NLN R+P+IV
Sbjct: 470 KESLSNDQLSVKEKRRH------HKKAPTLIQNLNSPRTPKIV 506
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 372 TKPKPDDKVKADEKTPEPKSAEPKPTD 452
+K DD++K D+KT E K A P D
Sbjct: 835 SKGSNDDEMKIDKKTTEEKEATPMEMD 861
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -1
Query: 454 TSVGFGSADLGSGVFSSALTLSSGFGFVSSGCLVSAS 344
+S GF S+ +G SS+ +L+S G VSS LVS+S
Sbjct: 3517 SSGGFSSSAFSTG--SSSFSLTSENGSVSSSSLVSSS 3551
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 90 ITSNPTSQDLNFTMKVLLFCMAFAAVTIAKPVADEKQELVAQPTSVADTKTTETQ 254
IT TS+D N + +FC+ F A+P + + +V P +T +++Q
Sbjct: 345 ITFETTSKDGNLLNAIRIFCLYFDLDYYARPNGEVLKLVVTHPNK-KNTSVSQSQ 398
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 366 EETKPKPDDKVKADEKTPEPKSAEPKPTDVPA 461
+ K K D K K D+K PK T VP+
Sbjct: 249 QNKKEKKDKKDKKDKKEKAPKEPPKAATPVPS 280
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 89 HNFKSDITGPKFHDEGLIILHGLCGCDYCE 178
+N + + G E + L L GCDYCE
Sbjct: 208 YNIEKALNGLDMSVEQFVDLCILLGCDYCE 237
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 360 VWSQLLLVLFYLRAQVLFL*FLESDRVS 277
+W L+++L+YL VLF+ F S VS
Sbjct: 239 IWQSLVMILYYL-LYVLFVFFSGSSGVS 265
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 305 FSFWSRIGFLFLFRNGMLCFSGFCVSYRSR 216
FS W + FL+L L F G + +RSR
Sbjct: 433 FSSWLLLIFLYLLFTVPLSFVGSLIGFRSR 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,457
Number of Sequences: 5004
Number of extensions: 30314
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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