Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L09
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   123   1e-29
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   2.1  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    25   3.7  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   4.9  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   6.5  
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       25   6.5  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    25   6.5  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    24   8.6  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    24   8.6  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  123 bits (297), Expect = 1e-29
 Identities = 60/102 (58%), Positives = 74/102 (72%)
 Frame = +1

Query: 121 KNHLSFMLPMPKLKAFQKIQIMLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 300
           K  +   +P P LKAF K Q  L RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKR
Sbjct: 57  KKAIVVFVPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKR 114

Query: 301 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHL 426
           PRSRTLT+V++AILED+VFP EI+GKR R   DG + IKV L
Sbjct: 115 PRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFL 156


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -2

Query: 420 HFDEL*AIELHSDA--FANN--LGREYQIFQYGVIYRSQCPGTGPFLFV 286
           H D +  ++  +DA  F+N+  +   + +   G+IYRS CP    F F+
Sbjct: 36  HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFL 84


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 142 LPMPKLKAFQKIQIMLVRELEKKFSGKHV 228
           LP  K   F+KI+  +VRE E+K +GK+V
Sbjct: 103 LPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 256 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 381
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 340 IWRHIQKSVSWNGAFSVCWLHVSCGWAWAGS 248
           +W HI+    W   F++  L   CG  W  S
Sbjct: 247 VWSHIENYTDWPDGFAI--LMSFCGVIWTMS 275


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 270 VAGLGQDLTVTNEHNMLTAELLF*LTDKHDL 178
           V+G+G DLT  N+    TAEL     ++H +
Sbjct: 123 VSGIGVDLTFGNDKACRTAELQKAYNEEHPI 153


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 193 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIV 372
           ++LEK+F G       +  + PK     +   K    RSR L   + A + + VF     
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166

Query: 373 GKRIRV 390
           G  IR+
Sbjct: 167 GVDIRL 172


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 300 PFLFVGYTCLVAGLGQDLTVTNEHNM 223
           P ++VGY   VAG+G  + V    +M
Sbjct: 424 PLIYVGYISCVAGMGAMICVNATTSM 449


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 215 LNFFSNSRTSMIWIFWNAFS 156
           L  F+  R S +W  WN  S
Sbjct: 234 LGIFAKKRFSFLWFLWNTSS 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,477
Number of Sequences: 5004
Number of extensions: 38058
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)