Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_L09
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 107 3e-24
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 103 6e-23
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 67 6e-12
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 1.2
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 1.2
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 27 4.8
03_06_0735 + 35859984-35860532 27 4.8
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 27 6.3
08_02_0505 + 17897038-17898870,17899049-17899108,17900034-179001... 27 8.3
07_01_0755 - 5806614-5806939,5807039-5809415 27 8.3
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 107 bits (258), Expect = 3e-24
Identities = 55/95 (57%), Positives = 72/95 (75%)
Frame = +1
Query: 142 LPMPKLKAFQKIQIMLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 321
+P KAF+KI + LVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT
Sbjct: 65 VPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLT 120
Query: 322 SVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHL 426
+V+D ILED+V+PAEIVGKRIR +LDG+++IK+ L
Sbjct: 121 AVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFL 155
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 103 bits (247), Expect = 6e-23
Identities = 56/117 (47%), Positives = 76/117 (64%)
Frame = +1
Query: 76 GTVHLPRPGKLNFITKNHLSFMLPMPKLKAFQKIQIMLVRELEKKFSGKHVVFVGDRKIL 255
G V + PG + + +P KA++KI + LVRELEKKFSGK VV V R+I+
Sbjct: 61 GAVQMDLPGN-----RKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIV 115
Query: 256 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHL 426
P + V RPR+RTLT+V+D ILED+V+PAEIVGKR+R LDG +++K+ L
Sbjct: 116 RPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFL 168
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 66.9 bits (156), Expect = 6e-12
Identities = 36/72 (50%), Positives = 50/72 (69%)
Frame = +1
Query: 160 KAFQKIQIMLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 339
KAF+KI + LV+ELEKKFSGK VVF R+I+ +P +K + PR+RTL +V+D I
Sbjct: 56 KAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGI 111
Query: 340 LEDLVFPAEIVG 375
LED+V ++G
Sbjct: 112 LEDVVSQLRLLG 123
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 301 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 417
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 296 FCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSMI 180
F L A+ L L L +L T+ CLPL FF+ + S++
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -3
Query: 422 CTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVLERGLFCLLATRVLWLGLG 255
C L E F L+ TI+ + MA+ T + GL+ +LA R+LWL +G
Sbjct: 481 CILSRSEDLEF-LLYYRTITRNLMWLAYMATTTAFAT---GLYTVLAPRILWLAIG 532
>03_06_0735 + 35859984-35860532
Length = 182
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 75 GNCTFTKAREIELHNKKSFIIY-VADAQTEGIPKDPNHA 188
GNC + RE+EL + +Y +AD + +G+ H+
Sbjct: 131 GNCVYMARREVELIAPHAIGVYSLADGEADGLAISGGHS 169
>02_01_0293 +
1955439-1956457,1957002-1957322,1957405-1957411,
1957954-1958041,1958143-1958324,1958508-1958644,
1958790-1958856,1959132-1959246,1959390-1959501,
1960420-1960495,1960576-1960758,1961166-1961326,
1961463-1961532,1962721-1962928,1963015-1963304,
1963388-1963509,1963605-1963749,1964040-1964113,
1964464-1964911
Length = 1274
Score = 27.1 bits (57), Expect = 6.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 313 SWNGAFSVCWLHVSCGWAWAGSYG 242
S G +CW+H + GW A +G
Sbjct: 146 SGGGVQDLCWIHHASGWLLASIHG 169
>08_02_0505 +
17897038-17898870,17899049-17899108,17900034-17900150,
17900352-17900389,17900446-17900641
Length = 747
Score = 26.6 bits (56), Expect = 8.3
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Frame = +1
Query: 61 ECSTAGTVHL---PRPGKLNFITKNHLSFMLPMPKLKAFQKIQIMLVRELEKKFSGK--- 222
E ++G HL P PGK T+ +PMP +K + L R++ KK K
Sbjct: 397 EAVSSGHQHLKWSPEPGKFFRETELVSGNTMPMPDIKDKMPPRAFLPRDIAKKIPFKPNA 456
Query: 223 -HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLV-FPAEIVGKRIRVKL 396
VF + + VA ++ P SR T ED+V F E++G I V+
Sbjct: 457 VSEVFGVPLDTAMGKAVTSTVAECERAP-SRGETKRCATSAEDIVDFAVEMLGNDIVVRS 515
Query: 397 DGS 405
S
Sbjct: 516 TAS 518
>07_01_0755 - 5806614-5806939,5807039-5809415
Length = 900
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = -1
Query: 346 LPIWRHIQKSV--SWNGAFSVCW--LHVSCGWAWAGSYGHQRTQHAYR 215
+P++ QKS S++G +C L V CG + SYG + +YR
Sbjct: 496 IPVFAPFQKSAASSFSGNTKLCGNPLVVDCGPIYGSSYGMDHRKISYR 543
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,265,023
Number of Sequences: 37544
Number of extensions: 262348
Number of successful extensions: 674
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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