Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L09
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   125   2e-29
AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    27   4.3  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    27   4.3  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    27   4.3  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      27   4.3  
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    27   7.4  
U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  125 bits (301), Expect = 2e-29
 Identities = 59/103 (57%), Positives = 80/103 (77%), Gaps = 1/103 (0%)
 Frame = +1

Query: 121 KNHLSFMLPMPKLKAFQKIQIMLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQK 297
           K+ +   +P+P+LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQK
Sbjct: 56  KSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQK 115

Query: 298 RPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHL 426
           RPRSRTLT+V+DA L++LV+PAE+VG+RIRVKLDG ++ KVHL
Sbjct: 116 RPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHL 158



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = +2

Query: 5   EVETSISQALVELETNSDLNAQLRELYI 88
           E+E  +SQAL++LETN D+ +QL+ELYI
Sbjct: 18  EIEKQVSQALIDLETNDDVQSQLKELYI 45


>AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical
           protein Y77E11A.9 protein.
          Length = 296

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 358 GIPDLPIWRHIQKSVSWNGAFSVCWLHVSCGWAW 257
           GIP+      +  S++W+G  + C+   +C  AW
Sbjct: 5   GIPNTTNNTQVNTSLTWDGCLTACFYSPACVMAW 38


>Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical
           protein C06B3.2 protein.
          Length = 665

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 301 AFSVCWLHVSCGWAWAGSYGH 239
           A SV W+ +SC + WAG  G+
Sbjct: 572 ALSVLWIILSCHYGWAGPIGN 592


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 364 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 269
           RP I D P+W  ++ +++++   S+C    +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 364 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 269
           RP I D P+W  ++ +++++   S+C    +C
Sbjct: 842 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 873


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 364 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 269
           RP I D P+W  ++ +++++   S+C    +C
Sbjct: 814 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 845


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 364 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 269
           RP I D P+W  ++ +++++   S+C    +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 271 KTRVANKQKRPRSRTLTSVYDAILEDLVFPAE 366
           K ++  K K  RSR+L++V  A  ++L FP E
Sbjct: 599 KPQLGKKMKVGRSRSLSAVRPAPRDELAFPDE 630


>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 277 RVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG-KRIRVKLDGS 405
           +V N  KR RSR   ++YD  ++  VFP +  G  +IRV   GS
Sbjct: 471 QVENPSKRERSRGRKTLYDTWMK--VFPDKKAGVPKIRVPGGGS 512


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 277 RVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG-KRIRVKLDGS 405
           +V N  KR RSR   ++YD  ++  VFP +  G  +IRV   GS
Sbjct: 471 QVENPSKRERSRGRKTLYDTWMK--VFPDKKAGVPKIRVPGGGS 512


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 277 RVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG-KRIRVKLDGS 405
           +V N  KR RSR   ++YD  ++  VFP +  G  +IRV   GS
Sbjct: 490 QVENPSKRERSRGRKTLYDTWMK--VFPDKKAGVPKIRVPGGGS 531


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,394,421
Number of Sequences: 27780
Number of extensions: 221251
Number of successful extensions: 556
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)