Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L08
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    30   0.31 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    29   0.72 
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    28   0.95 
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   1.7  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   2.2  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   6.7  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 541  TPSHTTFGGPVGRRL*-YSYRSAHLPGPPPIAETLPLSSSAFRL*PPRGESGAR 383
            +PS T    PV  RL   S     +P PPP++  LP SS+  R  PP   S  R
Sbjct: 1047 SPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSR--PPIATSAGR 1098


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 198 FQGLGPCIAGAAAALSARYIGDGTEGVPRIPHDIYSGGLRSRWIHAVGA 344
           F+GLGP + G   A S  +   G     RI  D+++ G  +  IH + A
Sbjct: 123 FRGLGPNLIGTIPARSINFFSYGNG--KRILADLFNNGQENSQIHLMAA 169


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +3

Query: 105 SISVG-GYRVRARTSMKYLGLTL----HGRWWFELHFQGLGPCIAGAAAALSARYIGDGT 269
           SIS+G G      T + + G+ L       W+    F GLG C+  A   + A Y+  G 
Sbjct: 446 SISIGLGIAGTVETHLNHKGVDLIRGYRSAWYMGTGFGGLGVCV--AILTVFASYLKVGQ 503

Query: 270 EGVPRIP 290
           +  P+ P
Sbjct: 504 QKSPKFP 510


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 84  PKAHGNAGPRSYGPPP*XXSQQLDPP 7
           PK+H    P+S  PPP    +QLD P
Sbjct: 100 PKSHNGYAPKSMNPPP----EQLDSP 121


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 369 EEGWWRAPLSPLGGQSRKAEDERGSVSAM 455
           E   W  PLSP   ++  AE +R  +SAM
Sbjct: 266 ENAAWSIPLSPGDSRTHSAETDRSLLSAM 294


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 227 TGDAWSKPLEMKLKPPSTVQCKTQIFHTG 141
           TGD+W   L+MKL   +  + + Q  H G
Sbjct: 394 TGDSWFNGLQMKLPAGAKFEVEMQWGHIG 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,691
Number of Sequences: 5004
Number of extensions: 72731
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)