Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L08
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    30   1.2  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z29117-14|CAA82386.1|  190|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z22179-15|CAA80173.1|  190|Caenorhabditis elegans Hypothetical p...    29   2.0  
L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protei...    29   3.5  
L23645-3|AAK26139.1|  211|Caenorhabditis elegans Zinc finger pro...    28   4.7  
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z66522-6|CAH04737.1| 1147|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z66522-5|CAA91405.1| 1149|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AL032637-5|CAA21609.1|  245|Caenorhabditis elegans Hypothetical ...    27   8.2  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = -2

Query: 188 KPPSTVQCKTQIFHTGPRPDPVPTDRDARSGGRPAPRPMEMQGLGLMARHLEXGPNNSI 12
           KP   V+   Q   T P P P P  + A     P P P     +   A  L   P N++
Sbjct: 34  KPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAV 92


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 469  PGPPPIAETLPLSSSAFRL*PPRGESGARHHPSSPL*ICTQSAPTAWIQRERRP 308
            P PPP A T    S AF+  P  G + A   P S   +  QS+  +  Q +++P
Sbjct: 1779 PPPPPAAATSSAYSQAFQAGPTMGRAAAPISPISAAIVPLQSSSFSSQQPQQQP 1832


>AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical
           protein C51G7.3 protein.
          Length = 754

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 469 PGPPPIAETLPLSSSAFRL*PPRGESGARHHPSSPL*ICTQSAPTAWIQRERRP 308
           P PPP A T    S AF+  P  G + A   P S   +  QS+  +  Q +++P
Sbjct: 404 PPPPPAAATSSAYSQAFQAGPTMGRAAAPISPISAAIVPLQSSSFSSQQPQQQP 457


>Z29117-14|CAA82386.1|  190|Caenorhabditis elegans Hypothetical
           protein C48B4.12a protein.
          Length = 190

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = -2

Query: 272 LSAIANISGTEGC--RCTGDAWSKPLEMKLKPPS-TVQCKTQIFHT-GPRPDPVPTDRDA 105
           +SA+  I G  G   + TGD W  P      P   + +CK + F T GP  +  P   D 
Sbjct: 14  VSAMGYIGGNRGSPKKPTGD-W--PSRFPQHPAGFSYKCKNRQFETSGPSQNQPPIGNDG 70

Query: 104 RSGGRPAPRP 75
               +P P+P
Sbjct: 71  EETPKPTPKP 80


>Z22179-15|CAA80173.1|  190|Caenorhabditis elegans Hypothetical
           protein C48B4.12a protein.
          Length = 190

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = -2

Query: 272 LSAIANISGTEGC--RCTGDAWSKPLEMKLKPPS-TVQCKTQIFHT-GPRPDPVPTDRDA 105
           +SA+  I G  G   + TGD W  P      P   + +CK + F T GP  +  P   D 
Sbjct: 14  VSAMGYIGGNRGSPKKPTGD-W--PSRFPQHPAGFSYKCKNRQFETSGPSQNQPPIGNDG 70

Query: 104 RSGGRPAPRP 75
               +P P+P
Sbjct: 71  EETPKPTPKP 80


>L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protein
           91 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
 Frame = +3

Query: 264 GTEGVPRIPHDIYSGGLRS---RWIHAVGADCVQIHSGEEGWWRAPLSPLGGQSRKAEDE 434
           G  G P +  D  + G+     ++  A G  C+Q  +GE G    P    G       D 
Sbjct: 100 GAAGEPGVDGDAGAAGIDGVAIQFASAAGGACIQCPAGEAG----PAGAPGAPGPAGPDG 155

Query: 435 RGSVSAMGGGPG 470
           +      GG PG
Sbjct: 156 QPGADGQGGAPG 167


>L23645-3|AAK26139.1|  211|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform b protein.
          Length = 211

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 384 ATIPPRHYESVHSPLPRHGSSENA 313
           +TIPPR   S+H+P  ++G+S +A
Sbjct: 62  STIPPRDKSSLHAPTVKNGNSLSA 85


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 481 SAHLPGPPPIAETLPLSSSAFRL*PPRGESGARHHPSSPL*ICTQSAP 338
           S H   P  + ETLP+SS        RG   +RH  S+P    T + P
Sbjct: 328 SGHRAPPAEVRETLPMSSQVSTF--LRGNESSRHSYSNPSTKVTTTPP 373


>AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2a protein.
          Length = 772

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 481 SAHLPGPPPIAETLPLSSSAFRL*PPRGESGARHHPSSPL*ICTQSAP 338
           S H   P  + ETLP+SS        RG   +RH  S+P    T + P
Sbjct: 328 SGHRAPPAEVRETLPMSSQVSTF--LRGNESSRHSYSNPSTKVTTTPP 373


>Z66522-6|CAH04737.1| 1147|Caenorhabditis elegans Hypothetical protein
            F14E5.2b protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 436  EEVFRRWEEDLADVHYGSYTIDAVRPVLQRWC 531
            E+V RR +E L D+H      +A    +QR+C
Sbjct: 1015 EQVARRLQESLVDIHLDPVLHEACAMDIQRYC 1046


>Z66522-5|CAA91405.1| 1149|Caenorhabditis elegans Hypothetical protein
            F14E5.2a protein.
          Length = 1149

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 436  EEVFRRWEEDLADVHYGSYTIDAVRPVLQRWC 531
            E+V RR +E L D+H      +A    +QR+C
Sbjct: 1017 EQVARRLQESLVDIHLDPVLHEACAMDIQRYC 1048


>Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical
           protein B0365.1 protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 463 PPPIAETLPLSSSAFRL*PPRGESGARHHPSSP 365
           P P   T P ++  F L P R  +G    P+SP
Sbjct: 435 PMPTVPTAPQTTGQFLLSPERNTAGTERPPASP 467


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
 Frame = -2

Query: 407 SERRKRSPPPSLLATMNLYTVRSHGMDPARTQAATVDIVRYPRNTLSAIANISGTEGCRC 228
           SE  KR+PP +     +  +   H      + A     +   + +  + ++   T   RC
Sbjct: 302 SEPTKRAPPTAAQTASSTSSRIQHNQTLNNSNATYAQPIIRRQPSYGSRSSSIATSQMRC 361

Query: 227 TGD----AWSKPLEMKLKPPSTVQCKTQIFHTGPRPDPVPTDRD 108
                  +W    E KLK  S        F+ G  P PVP+D +
Sbjct: 362 DQSEIDFSWVNEEEDKLKRESKRIDSLPEFYFGMDPPPVPSDNE 405


>AL032637-5|CAA21609.1|  245|Caenorhabditis elegans Hypothetical
           protein Y43F8C.5 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = -2

Query: 287 YPRN--TLSAIANISGTEGCRCTGDAWSKPLEMKLKPPSTVQCKTQIFHTGPRPDPVPTD 114
           YPR+  T  A     G  G  C  D ++K     L PP+T    T      P P P  T 
Sbjct: 161 YPRSNVTWKATDQQIGEPGFACDADRYNKNGLCSLDPPTTTTTTTTTTTVKP-PPPTTTP 219

Query: 113 RDARS 99
           + + S
Sbjct: 220 KSSDS 224


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 131  DPVPTDRDARSGGRPAPRPMEMQGLGLMARHLEXGPNNSIRPR 3
            D V   R+ R GG   P P    G  +M R +E   ++ +RPR
Sbjct: 1226 DEVEERRNIRRGGYRPPPPFH-NGTDMMERDMERRDHSMMRPR 1267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,087,291
Number of Sequences: 27780
Number of extensions: 508561
Number of successful extensions: 1518
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)