Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L07
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   272   3e-74
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   272   4e-74
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   0.97 
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   1.3  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.7  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   2.2  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   3.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.2  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   6.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.8  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   9.0  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   9.0  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  272 bits (667), Expect = 3e-74
 Identities = 125/186 (67%), Positives = 149/186 (80%)
 Frame = +3

Query: 9   RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC 188
           R+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK  
Sbjct: 21  RYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIG 80

Query: 189 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 368
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140

Query: 369 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYR 548
            D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R  G    DGC  K+ 
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFL 200

Query: 549 PEHGPL 566
            + G L
Sbjct: 201 NKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  272 bits (666), Expect = 4e-74
 Identities = 125/186 (67%), Positives = 149/186 (80%)
 Frame = +3

Query: 9   RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC 188
           R+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK  
Sbjct: 21  RYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIG 80

Query: 189 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 368
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140

Query: 369 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYR 548
            D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R  G    DGC  K+ 
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFL 200

Query: 549 PEHGPL 566
            + G L
Sbjct: 201 NKRGSL 206


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +3

Query: 219 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 386
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 387 QVIEALRRAKFKFPGRQKIYVSK 455
               AL++A F  PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 9   RFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 152
           +FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+G
Sbjct: 46  KFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 30  DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 149
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -3

Query: 343 PIRTRATVPWGFPNAPRIPVWSLSAPA---HDNILLMRMTWKGCSLIRMWN*SLPQFFTR 173
           P+RT +   WG+ N   IP+W +  PA   +  I    +T      +R +  +L +FFTR
Sbjct: 81  PLRTLSRW-WGYVNRIEIPLW-MRVPAFGLYSKIFGCNLTEADPDDVRQYK-NLAEFFTR 137

Query: 172 YL 167
            L
Sbjct: 138 KL 139


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 615 KYFTHYVVHFGISSRHRGVHALGGT*RCIHR*QN 514
           KY  H+ VH      H  + ++ G  RCI +  N
Sbjct: 589 KYIHHFWVHTWFDKTHPDIESITGIIRCIDKVPN 622


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 144 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 25
           P P +S+ R  Q+LSA +  S+P   S  PS   GSL  +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +3

Query: 51   DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 194
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 322 VPWGFPNAPRIPV 284
           + W FPNAP IPV
Sbjct: 46  IKWIFPNAPSIPV 58


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +1

Query: 481 VRNLRSYVMLDVLLTMDATSSTAQSMDPS 567
           V +LRS+++ + L+++ ++SST   + PS
Sbjct: 176 VASLRSHILFNALISILSSSSTLHKLYPS 204


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 192 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 296
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 359 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA 261
           RH G+S  +++ C L +  +T    LE + S A
Sbjct: 94  RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 89  WEVIHCRSLFAQVENTDLWVRHTPT 15
           + ++H  +LFA  EN D ++   PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,610
Number of Sequences: 5004
Number of extensions: 59379
Number of successful extensions: 194
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)