Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_L06
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 155 4e-39
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 72 6e-14
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 61 1e-10
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 57 2e-09
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 52 9e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 50 3e-07
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 50 3e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 50 4e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 49 6e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 48 8e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 48 1e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 47 3e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 3e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 45 1e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 44 1e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 44 2e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 2e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 2e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 43 4e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 43 4e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 41 1e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 4e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 4e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 39 7e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 7e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.002
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 0.002
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 38 0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.002
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 37 0.002
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.011
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.014
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 34 0.014
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 33 0.025
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 33 0.044
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.076
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 31 0.10
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 31 0.18
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 31 0.18
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.23
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 29 0.54
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 0.94
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 1.6
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 2.2
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.2
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 26 3.8
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 5.0
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 5.0
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 155 bits (377), Expect = 4e-39
Identities = 71/163 (43%), Positives = 106/163 (65%), Gaps = 5/163 (3%)
Frame = +3
Query: 12 KLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAA 191
K+F+GGL+WET+D LRD+F +GE+ V D TGRSRGF F+ FK P +++VM+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 192 GEHTINSKKVDPKKAKARH-----GKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDK 356
EH ++ K +DPK+A R K+FVGG+ + +++E +NFF+ FG +++ + DK
Sbjct: 224 -EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDK 282
Query: 357 TKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVDVKRATPK 485
+ +GF F+T+E+E V + P TI GK V+VKRATPK
Sbjct: 283 DTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 70.1 bits (164), Expect = 2e-13
Identities = 29/79 (36%), Positives = 54/79 (68%)
Frame = +3
Query: 249 GKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLK 428
GK+F+GGL+ E +DD ++++F FG +++ + D T + +GF F+TF++ + VNE++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 429 TPKQTIGGKEVDVKRATPK 485
+ + + GK +D KRA P+
Sbjct: 222 SKEHHLDGKIIDPKRAIPR 240
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 72.1 bits (169), Expect = 6e-14
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 23/180 (12%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAA- 191
+FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P++ +AA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 192 GEHTINSKKV-----DPKK------AKARHGK-----------IFVGGLSSEISDDEIKN 305
G I+ + V +P+ A+ R G +FVG LS ++D++
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384
Query: 306 FFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVDVKRATPK 485
F G+I + +P D + KGF ++TF + ++ I G+ + +TP+
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 61.3 bits (142), Expect = 1e-10
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Frame = +3
Query: 3 TRRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVF-------KA 161
T L+VG L ++ L + F++ G + SI V D T RS G+A++ F KA
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 162 PDSIDKVMAAGEH-TINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEV 338
D ++ + G I + DP K G +F+ L I + + + FS FG I+
Sbjct: 138 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 339 EMPFDKTKNQRKGFCFITFESEQVVNELLK 428
++ D+ N KG+ F+ F+S + N ++
Sbjct: 198 KVAVDELGN-AKGYGFVHFDSVESANAAIE 226
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVM 185
LF+ L E D+ L+ FSA+G I S + TD G+S+GF F+ + P+ +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 56.8 bits (131), Expect = 2e-09
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 194
LFVG L +ET+D +L++HF G+I + + T +TG+ +GF F+ F D+ K M G
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 195 EHT-------INSKKVDPKKAKARHGK 254
++ SK++ K AR G+
Sbjct: 290 HNSWRLEYGEDRSKRMRNKSPMARSGR 316
Score = 33.5 bits (73), Expect = 0.025
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 395
+FVG L E +D ++K F G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 51.6 bits (118), Expect = 9e-08
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +3
Query: 3 TRRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKV 182
T+R +FVG L++E ++ L +F G I+ + + DP T +GFA+I FK +DK
Sbjct: 268 TKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKA 327
Query: 183 MAAGE 197
+ E
Sbjct: 328 LLLNE 332
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNE-LLKT 431
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V++ LL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 432 PKQTIGGKEVDVKRA 476
K+ G+ + + RA
Sbjct: 332 EKKMPEGRTLRIMRA 346
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 50.0 bits (114), Expect = 3e-07
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Frame = +3
Query: 6 RRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVM 185
RR +FV L+ + +EL D F G + + D +GRS+G A++ F DS+ +
Sbjct: 239 RRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298
Query: 186 A-AGEHTINSKKV-----DPKKAKARHG--------------KIFVGGLSSEISDDEIKN 305
A +G+ + + K KAR ++ V + ++D+++K
Sbjct: 299 ALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKA 358
Query: 306 FFSNFGNIIEVEMPFDKTKNQRKGFCFITFES 401
F FG+I V + D +N+ KGF +I + +
Sbjct: 359 IFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRN 389
Score = 33.5 bits (73), Expect = 0.025
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 434
+FV L++ ++ E+ +FF G + + ++ DK + KG ++ F E V +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 435 KQTIGGKEVDVK 470
+ + G V V+
Sbjct: 302 GKRLLGLPVIVQ 313
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 50.0 bits (114), Expect = 3e-07
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP--DSIDKVMA 188
LFVG L ++S + L+ HF G++ S+ + TD +GR +G+AF+ F P D I K +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 189 AGEHTI-NSKKVDPKKAKARHGK 254
HTI +K++ + GK
Sbjct: 154 F-HHTIYKERKINIELTAGGGGK 175
Score = 41.9 bits (94), Expect = 7e-05
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Frame = +3
Query: 195 EHTINSKKVDPKKAKARHGK-------IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFD 353
+H++++ K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 354 KTKNQRKGFCFITF--ESEQVVNELLK 428
KT ++KG+ F+ F V+++ LK
Sbjct: 127 KTSGRQKGYAFVEFINPKTDVISKALK 153
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 49.6 bits (113), Expect = 4e-07
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Frame = +3
Query: 165 DSIDKVMAAGEHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 344
D ++ + A H + P + +A ++FVG LS+ EI++ F G + +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 345 PFDKTKNQRK----GFCFITFESEQVVNELLKTPK-QTIGGKEVDVKRATP 482
PF + + + G F+TF +++ V++ ++T +T+ +E+ V++A P
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARP 126
Score = 35.1 bits (77), Expect = 0.008
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 12 KLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSR----GFAFIVFKAPDSIDK 179
++FVG LS T E+R F G + + + +R G AF+ F + +DK
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 180 VMAAGEHTINSKKVDPKK 233
+ T+N K +D ++
Sbjct: 105 AI----ETLNGKTLDDRE 118
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.8 bits (111), Expect = 6e-07
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMA 188
+ ++VG + + + +EL+ HF++ G + + + D TG +GFA+I F P + +
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
Query: 189 AGEHTINSK--KVDPKK 233
++ + KV PK+
Sbjct: 115 LNGSMLHERPLKVTPKR 131
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELL 425
++VG + ++ +E+++ F++ G++ V + DK KGF +I F E V N LL
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 48.4 bits (110), Expect = 8e-07
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 252 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELLK 428
++F+ L+ ++D++K+ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 429 TPKQTIGGKEVDV 467
+ G+ + V
Sbjct: 384 LDAKPFQGRLLHV 396
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +3
Query: 195 EHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRK 374
E TI K + K + + G ++VG L + +++ +FS FG ++ + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 375 GFCFITFESEQVVNELLKT 431
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 194
L+VG L +K++R +FS +G + + + + TG S+ +AFI F++ D + V+A
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD-VANVVAET 165
Query: 195 EH 200
H
Sbjct: 166 MH 167
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.8 bits (106), Expect = 3e-06
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +3
Query: 9 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 158
+ +F+ LS++T + ++ F+ YG IE I V + TG+S G+AF+VF+
Sbjct: 100 KTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.4 bits (105), Expect = 3e-06
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Frame = +3
Query: 174 DKVMAAGEHTINSKKVD---PKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 344
D+V E T KK P+ ++ +FV G++S + +DE++ FS FG + V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 345 PFDKTKNQRKGFCFITFES-EQVVNELLKTPKQTIGGKEVDVKRA 476
+ +GF F++F + E+ + + Q G+ ++V++A
Sbjct: 133 MREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVF 155
LFV G++ + EL+ FS +G + + + +P T SRGF F+ F
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.8 bits (101), Expect = 1e-05
Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 194
LFV L+++T +L + FS G I+ V T+P TG +RG+ F+ F ++ A
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF---SMLEDAQRAA 63
Query: 195 EHTINSK-----------------KVDPKKAKA--------RHGKIFVGGLSSEISDDE- 296
+ N K +VD + KA ++ + L I +
Sbjct: 64 KELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQH 123
Query: 297 IKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQT-IGGKEVDVKR 473
++ FS FG + E+++P K + GF F+ + + E + + T I G+ + V
Sbjct: 124 LEPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
Query: 474 ATPK 485
A K
Sbjct: 183 AVSK 186
Score = 38.3 bits (85), Expect = 9e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 158
+FV L +E +++EL +HF +G + + DP T RS G FI F+
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 31.1 bits (67), Expect = 0.13
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +3
Query: 168 SIDKVMAAGEHTINSKKVDP--KKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVE 341
++D V +G+ + + ++ + + +FV L E ++ E+ N F FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 342 MPFDKTKNQRKGFCFITFESEQVVNELLKTPKQ 440
+ D ++ G FI F E+ L+ Q
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLEMASQ 340
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3
Query: 225 PKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMP 347
P+ A + +FVGGLS +S++E+K F NFG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHF-SAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAA 191
+FVG LS ++ ++ F S Y +S + TDP T SRG+ F+ F D D+ A
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF--TDENDQKSAL 245
Query: 192 GE 197
E
Sbjct: 246 AE 247
Score = 30.7 bits (66), Expect = 0.18
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTG 125
+FVGGLS S++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK----APDSIDKV 182
++VG L W TSD+ L D F+ G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Score = 35.5 bits (78), Expect = 0.006
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 192 GEHTINSKKV-DPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQ 368
GEHT + + +K + +++VG LS ++ E+K F GN++ E+ +
Sbjct: 46 GEHTERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEI-LNLPNGL 104
Query: 369 RKGFCFITFESEQVVNELLKT 431
KG I + + + +KT
Sbjct: 105 SKGCAIIEYSTAEEARTAIKT 125
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQ 407
I++G L ++++D+I FS FG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 43.6 bits (98), Expect = 2e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 194
+++G L ++ ++ ++ FS +GE IN+ D TG+S+GFAF+ K D V+A
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFL--KYEDQRSTVLAVD 90
Query: 195 EHTINSKKVD 224
T N K +D
Sbjct: 91 NMT-NVKLLD 99
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVF 155
L V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 228 KKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 395
K+ + + V LS + ++E+++ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/75 (26%), Positives = 42/75 (56%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 194
+FVG + ++ S++++ + F+ G +++ + DP TG +G+ F F DS MA
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFF--DSETTAMAV- 65
Query: 195 EHTINSKKVDPKKAK 239
+N+ ++ P+K +
Sbjct: 66 -RKLNNSELGPRKIR 79
Score = 33.5 bits (73), Expect = 0.025
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFIT-FESEQVVNELLKT 431
+FVG + ++S+ ++ F+ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 432 PKQTIGGKEVDVK 470
+G +++ V+
Sbjct: 69 NNSELGPRKIRVE 81
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 42.7 bits (96), Expect = 4e-05
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 21 VGGLSWETSDKELRDHFSAYGE-IESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGE 197
VG LS++ ++ +L D F GE + SI + DP T RSRGF ++ F+ D++ +A
Sbjct: 98 VGNLSFDLTENDLGDFF---GEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSG 154
Query: 198 HTINSKKVDPKKAKAR 245
+ + V A+ R
Sbjct: 155 EDLMGRPVRITVAEPR 170
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/75 (21%), Positives = 39/75 (52%)
Frame = +3
Query: 261 VGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQ 440
VG LS +++++++ +FF + + + D + +GF ++ FE+ ++ L +
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 441 TIGGKEVDVKRATPK 485
+ G+ V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 12 KLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSI 173
++FV +S + ++LR HF ++GE+ +++K +P TG S G I F SI
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
Score = 33.9 bits (74), Expect = 0.019
Identities = 10/55 (18%), Positives = 30/55 (54%)
Frame = +3
Query: 252 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVN 416
++FV +S ++ ++++ F +FG + ++++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 12 KLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDK 179
+LFVG L + +D+ L FS Y + V D G++RGF F+ FK D K
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLK 85
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.5 bits (88), Expect = 4e-04
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGE-IESINVKTDPNTGRSRGFAFIVFKAPDSID-KVMA 188
LFVG L ++ L D FSA G+ +++ V D N GRS+G+ F+ + + ++ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 189 AGEHTINSKKVDPKKAKARHGK 254
+ +K + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
Score = 34.3 bits (75), Expect = 0.014
Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 9/163 (5%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKV-MAA 191
+++G L + +D L + G + +I++ D GF F F ++
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 192 GEHTINSKKVDPKKAKARHG-------KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPF 350
+ + K + +A G +FVG L + + + + FS G +++
Sbjct: 73 NQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVA 132
Query: 351 DKTKNQRKGFCFITFESEQVVNELLKT-PKQTIGGKEVDVKRA 476
+ KG+ F++++S + + ++ Q + K + V A
Sbjct: 133 RDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYA 175
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 38.7 bits (86), Expect = 7e-04
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Frame = +3
Query: 207 NSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNI-------------IEVEMP 347
NSK P + + I+VG + S +SD+EI FS +G + E P
Sbjct: 3 NSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKP 62
Query: 348 FDKTKNQRKGFCFITFESEQVVNELLKTPK-QTIGGKEVDVK 470
F KN + + F+ F + + + E+LK K T+G +++ +K
Sbjct: 63 FKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIK 103
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +3
Query: 42 TSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKKV 221
T +L D FS +G I S + PN+G S+G+ F+ F+ I+ + A + T+N V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR---QIEAAVRA-KDTLNGMMV 450
Query: 222 DPKK 233
K+
Sbjct: 451 GKKR 454
Score = 34.7 bits (76), Expect = 0.011
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESI----------NVKTDPNTGRSRG--FAFIVFK 158
++VG + SD+E+ HFS YG++ESI K P G + F+ F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 159 APDSIDKV------MAAGEH--TINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKN 305
+SI++V M G+ TI ++ V+P K + K +++ + + I+N
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKLTDKKFKPNDTSITANVFNPSIQN 135
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 294 EIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVDVKR 473
++++ FS FG+I+ + KG+ F+ F Q+ E K T+ G V KR
Sbjct: 399 QLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF--RQI--EAAVRAKDTLNGMMVGKKR 454
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 7e-04
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 434
+FVGGL+S +S+ +++ F FG I+ +++PF KG F+ + + + + T
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG------KGCGFVQYSEKSAAEKAINTM 352
Query: 435 KQTIGG 452
+ + G
Sbjct: 353 QGALVG 358
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELLKT 431
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 432 PKQTIGGKE--VDVKR 473
+ G+E V +KR
Sbjct: 161 NNAELDGEELFVSIKR 176
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/79 (20%), Positives = 42/79 (53%)
Frame = +3
Query: 9 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMA 188
R+L+V + ++ ++K++ F YG++ES+ + N + +GF ++V + ++
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENALS 814
Query: 189 AGEHTINSKKVDPKKAKAR 245
A + ++ ++ +K R
Sbjct: 815 AAGKQLGNRVLNVVLSKPR 833
Score = 33.9 bits (74), Expect = 0.019
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 434
+ V L S+IS++E+K FF + GNII + + D K+ + I F V
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQKDVK--VAQIEFSETSEVLAAKTRD 649
Query: 435 KQTIGGKEVDVK 470
++I G E+ V+
Sbjct: 650 LKSIRGHEISVQ 661
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +3
Query: 168 SIDKVMAAGEHTINSKKVDPKKAKA--RHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVE 341
SI ++ A + I K D + A + ++VG LS ++++I FS G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 342 MPFDKTKNQRKGFCFIT-FESEQVVNEL 422
M D+ GFCF+ FE++ ++ L
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSL 90
Score = 35.1 bits (77), Expect = 0.008
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFI-VFKAPDSIDKVMAA 191
++VG LS+ T+++++ FS GEI I + D T GF F+ F+ D++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 192 GEHTINSKKVDPKKAKARHG 251
+++ + + +A HG
Sbjct: 94 SRTSLDERII---RADLDHG 110
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 164
++VG + +E +++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 29.5 bits (63), Expect = 0.41
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 395
++VG + E++++++ + F G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +3
Query: 252 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTK-NQRKGFCFITFESEQVVNELLK 428
+I+VGGLSS I ++++ FS FG++ +E+ T + F ++ F +++ + K
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 429 T--PKQTIGGKEVDVKRATP 482
+ T G ++ ++ A P
Sbjct: 66 SYLSNATFKGSKLRIEEARP 85
Score = 33.5 bits (73), Expect = 0.025
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 9 RKLFVGGLSWETSDKELRDHFSAYGEIESINV--KTDPNTGRSRGFAFIVFKAPD 167
++++VGGLS +L FS +G + ++ + K+ P G + FA++ F+ +
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.7 bits (76), Expect = 0.011
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFK 158
LF+ LS++ + +E+ D F YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.014
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 252 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFES 401
KI++ L + +D++ FG+++ ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 30.3 bits (65), Expect = 0.23
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 3 TRRKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKV 182
++ K+++ L + ++ + +G++ S + + G S+GF F FK P +
Sbjct: 308 SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVA 367
Query: 183 MAA--GEHTINSK 215
++ G+ T +K
Sbjct: 368 ISGLDGKDTYGNK 380
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 34.3 bits (75), Expect = 0.014
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNE 419
+FV L+ D++++ FS FG II ++ DK + FI F++++ V +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.5 bits (73), Expect = 0.025
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +3
Query: 207 NSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCF 386
+ K ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 282 HDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 387 ITFESEQ 407
FE E+
Sbjct: 342 ACFEEEK 348
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 32.7 bits (71), Expect = 0.044
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 51 KELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAP 164
++L + FS +G I+S + + P+T S+G+ F+ F P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 29.5 bits (63), Expect = 0.41
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = +3
Query: 183 MAAGEHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTK 362
M A E K KK + I+VG L S ++ F FGN + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 363 NQRKG------FCFITFESE 404
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3
Query: 255 IFVGGLSSEI--SDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFIT----FESEQVVN 416
+FV L I + +++ FS FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 417 EL 422
L
Sbjct: 481 TL 482
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.9 bits (69), Expect = 0.076
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 228 KKAKARHGKIF-VGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 395
+ AK+ G I V G+ E +++++++ F++FG + + + D+ KG+ I +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 31.5 bits (68), Expect = 0.10
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 276 SEISDDEIKNFFSNFGNIIEVEM---PFDKTKNQRKGFCFITFESEQVVNELL 425
S +++D + ++FSN G EVEM F+KT +G F + +Q + + L
Sbjct: 477 SNLTNDSVNSYFSNIGG-SEVEMKHSAFEKTLESSRGILFSLSQVQQALRQQL 528
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 30.7 bits (66), Expect = 0.18
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 12 KLFVGGLSWETSDKELRDHF-SAYGEIESINVKTDPNTGRSRGFAFIVFKAP 164
K+ V L + ++ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 56 KIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 30.7 bits (66), Expect = 0.18
Identities = 17/79 (21%), Positives = 34/79 (43%)
Frame = +3
Query: 39 ETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGEHTINSKK 218
E S R++ GE+E V +P + ++F K+ A +++ ++
Sbjct: 337 EISQVVQRENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFER 396
Query: 219 VDPKKAKARHGKIFVGGLS 275
+DP K A + GG++
Sbjct: 397 IDPAKVSALQQMLIAGGVN 415
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.3 bits (65), Expect = 0.23
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 9 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 119
R +F+G L +KE+ + F +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEM 344
+F+G L S + EI+ F FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 29.1 bits (62), Expect = 0.54
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Frame = +3
Query: 15 LFVGGLSWETSDKELRDHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAG 194
LF+ G+ E +D ++R HF YG ++S+ + R++ AF+ FK S + +AA
Sbjct: 214 LFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTRSSAE--IAAA 265
Query: 195 EHTINSKKVDPKKAKARHGK-IFVGGLSSEISDDEI 299
+ ++ + K + GK +GG E+ + ++
Sbjct: 266 ASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 0.94
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +3
Query: 285 SDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIGGKEVD 464
+++ I++FFS FG + +VE+ N C + F S + N +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 465 V 467
+
Sbjct: 309 I 309
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 9 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 119
R +F+G L ++ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 9 RKLFVGGLSWETSDKELRDHFSAYGEIESINVKTDPN 119
R +++G + + L++ F +GEIE +N + N
Sbjct: 414 RNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEM 344
+F+G L + I++DEI+ FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +3
Query: 219 VDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFE 398
+ P K +F+GG++ + + +++ F FG++ + + + K F E
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAE 455
Query: 399 SEQVVNELLKTPKQTIGGK 455
QV E + TI K
Sbjct: 456 KAQVAMENVPFADTTIRTK 474
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +3
Query: 273 SSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFES 401
+ +++D +++ +S+FG + V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 406 CSDSNVMKQNPFLWFFVLSKGISTSIIFPKLLKKFFISSSEI 281
CS SN +K + +L+ L+ G+ + P+LL + S+I
Sbjct: 7 CSSSNTIKVSIYLFLHTLTYGLLNYHLNPRLLASTGVVESDI 48
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 132 RGFAFIVFKAPDSIDKVMAAGEHTINSKK 218
RGFA IVF A S ++V G H +N K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 255 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLK 428
I+VG L S++E+K FS + + F +TK CF+ FE+ E LK
Sbjct: 428 IYVGNLPPSTSEEELKVLFST--QVGYKRLCF-RTKGNGP-MCFVEFENIPYAMEALK 481
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 5.0
Identities = 7/31 (22%), Positives = 21/31 (67%)
Frame = +3
Query: 252 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 344
++FVG + + + +++ +FF +G I++ ++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL 35
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 12 KLFVGGLSWETSDKELRDHFSAYGEI 89
+LFVG + + + +++ D F YG+I
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQI 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,025
Number of Sequences: 5004
Number of extensions: 37524
Number of successful extensions: 210
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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