Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_L05
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 48 1e-06
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 35 0.008
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 34 0.015
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 33 0.034
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.044
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 29 0.41
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 29 0.72
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.2
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 3.8
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 26 5.1
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 6.7
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 48.0 bits (109), Expect = 1e-06
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 3/158 (1%)
Frame = +1
Query: 118 DTVFILFSSGTTGLPKGVMLTHINALCAAMNFENDNMHEDKFKTMLSIVPWFHAYGLI-S 294
D + +L +SGTTG PK V LTH N LC +++ + D T ++P FH +GL+
Sbjct: 162 DVMLVLHTSGTTGRPKVVPLTHKN-LCRSIHNITTSYRLDPRDTSYVVMPLFHVHGLLCG 220
Query: 295 TINYILIKKTIVYFSGFNPQKYLNAIQEYKXXXXXXXXXXXXXXXKAPIVPKYDLSSVNV 474
++ + V F+ + +Y + P P L +
Sbjct: 221 LLSTLASGGCAVVPPKFSAHSFWKEFIQYGATWYTAVPTIHQILLRTP--PPKPLPRIRF 278
Query: 475 VWCGAAPLSAETIN--ETLKRMPNCIGIFQAYGMTETS 582
+ ++PL+ ++ E R P + +AY MTE S
Sbjct: 279 IRSCSSPLAPPVLSKLEATFRAP----VLEAYAMTEAS 312
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 35.1 bits (77), Expect = 0.008
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 115 TDTVFILFSSGTTGLPKGVMLTHINALCAAMNFEN 219
++ ++L++SG+TG PKG LTH N + + F++
Sbjct: 2870 SNLAYVLYTSGSTGKPKGCCLTHHNVVQCMLAFQD 2904
Score = 31.9 bits (69), Expect = 0.077
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 58 DIKVETDVRSYEPAEVQGWTDTVFILFSSGTTGLPKGVMLTH 183
+IKV+ ++ + E ++L++SG+TG PKGV ++H
Sbjct: 342 EIKVDDEIPPFPFPE--SLDSVAYVLYTSGSTGNPKGVAISH 381
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 34.3 bits (75), Expect = 0.015
Identities = 13/20 (65%), Positives = 19/20 (95%)
Frame = +1
Query: 130 ILFSSGTTGLPKGVMLTHIN 189
I+++SG+TGLPKGV+L+H N
Sbjct: 244 IMYTSGSTGLPKGVILSHKN 263
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 33.1 bits (72), Expect = 0.034
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 43 IISYSDIKVETDVRSYEPAEVQGWTDTVFILFSSGTTGLPKGVMLTHINALCAAMNFEND 222
II+Y ++ + +P D +++SG+TG PKGV+L H N + A
Sbjct: 222 IITYDNL-LSLGKEKPQPPHPPKADDICCYMYTSGSTGKPKGVVLLHRNIIAALGGINRI 280
Query: 223 -NMHEDKFKTMLSIVPWFHAYGLI 291
+ H + +L+ +P H + I
Sbjct: 281 LSQHINVKDYVLAYLPLAHIFEFI 304
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.7 bits (71), Expect = 0.044
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 34 ESGIISYSDIKVETDVRSYE--PAEVQGWTDTVFILFSSGTTGLPKGVMLTHINAL 195
E+G+ S+++ E D R+YE E G T + SSGT G PK L + ++L
Sbjct: 372 ENGVGEESEMESEIDDRNYETMEEEADGETPLAIVKASSGTKGWPKMFTLPNPSSL 427
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 29.5 bits (63), Expect = 0.41
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 88 YEPAEVQGWTDTVFILFSSGTTGLPKGVM 174
Y P V +F+L++SG+TG PKGV+
Sbjct: 256 YCPPAVVNPEHPLFLLYTSGSTGKPKGVV 284
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 28.7 bits (61), Expect = 0.72
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 79 VRSYEPAEVQGWTDTVFILFSSGTTGLPKGVMLTHIN-ALCAAMNFENDNMHEDKFKTML 255
++S + V G T + F+SG+ G+PKGV H + A + N+ E TML
Sbjct: 445 LKSEQTGVVVGPDSTPTLSFTSGSEGIPKGVKGRHFSLAYYFDWMAQEFNLSESDRFTML 504
Query: 256 S 258
S
Sbjct: 505 S 505
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 208 NFENDNMHEDKFKTMLSIVPWFHAYGLISTINYILIKKTIVY 333
NF ND E+ F+ S++ + IN ILI T+ Y
Sbjct: 339 NFSNDQKAENPFEWATSLLKTISIIDEVELINKILINYTMQY 380
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 490 APLSAETINETLKRMPNCIGIFQAYGMTETSLAATKDS 603
A S + ++E + PN + IFQ + TSL+A KD+
Sbjct: 336 ASASVDDVSEESQVEPNTL-IFQNFSSPSTSLSAPKDT 372
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 127 FILFSSGTTGLPKGVMLTHINALCAAMNFENDNMHEDKFKTMLSIVPWFHAYGLI 291
F+ ++GT VM T NA AAM ++++ K + SI+ HA LI
Sbjct: 213 FLNLTAGTWEENGIVMPTKNNAFNAAMRENSNSVSSTKIRKQESILEKIHAQRLI 267
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 501 TEGSGTTPHDINRR*IVFRYNW 436
T G G P ++ R I +R+NW
Sbjct: 60 TTGQGEMPLNMRERIITYRFNW 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,626
Number of Sequences: 5004
Number of extensions: 51260
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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