Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L04
         (172 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    23   5.4  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    23   5.4  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    23   5.4  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = -3

Query: 98  HCHGPDNDQYAARHDADQQRHVV 30
           HC  P++  ++  +D D+  H +
Sbjct: 393 HCKLPESQDFSMHNDVDELLHTI 415


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 83  DNDQYAARHDADQQRHVV 30
           D D YA+ HDA  +  V+
Sbjct: 347 DEDPYASSHDASSEEEVL 364


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 4   GIRHEVLPLTTWRC*SASCRAAYWSLSGP 90
           G+ H+++P T   C   +     W ++GP
Sbjct: 720 GLSHKLIPFTPNDCFVGNGNVNIWLITGP 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 321,967
Number of Sequences: 5004
Number of extensions: 2779
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)