Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L04
         (172 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0725 + 5305839-5306279,5306816-5307028,5307229-5307675,530...    27   2.1  
05_01_0556 - 4876849-4877328                                           26   3.8  
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271...    26   5.0  
07_01_1206 - 11505450-11506403                                         25   6.6  

>06_01_0725 +
           5305839-5306279,5306816-5307028,5307229-5307675,
           5307768-5307917,5308185-5308486,5309718-5309758,
           5311294-5311968,5312343-5312386
          Length = 770

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 92  HGPDNDQYAARHDADQQRHVVSGSTSC 12
           HG D+D Y   H  D++R       SC
Sbjct: 21  HGDDDDDYVVLHGCDRRRQHYGHGRSC 47


>05_01_0556 - 4876849-4877328
          Length = 159

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
 Frame = -3

Query: 92  HGPDNDQYAARHD----ADQQRHVVSGSTSCR 9
           HGPD D +  RHD      +Q    SG   CR
Sbjct: 27  HGPDGDGHGGRHDPGNPVSKQAAEHSGQRPCR 58


>11_06_0713 +
           26524984-26525276,26526008-26526434,26526550-26527171,
           26528059-26528099,26528181-26528249,26528565-26528665,
           26529300-26529378,26529955-26530053,26530129-26530197,
           26530326-26530375,26530482-26530548,26531031-26531125,
           26534469-26534856
          Length = 799

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +1

Query: 52  ASCRAAYWSLSG-PWQWRGRGH 114
           +S   A W+  G PW WRG G+
Sbjct: 326 SSTAEALWANRGIPWPWRGHGN 347


>07_01_1206 - 11505450-11506403
          Length = 317

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 71  YAARHDADQQRHVVSGSTSCRIP 3
           ++ARHD ++     S STS R P
Sbjct: 54  WSARHDGEESTSSASASTSVRAP 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,470
Number of Sequences: 37544
Number of extensions: 29523
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)