Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L04
         (172 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK125511-1|BAC86188.1|  559|Homo sapiens rome) (ELN).  protein.        30   1.5  

>AK125511-1|BAC86188.1|  559|Homo sapiens rome) (ELN).  protein.
          Length = 559

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 34  TWRC*SASCRAAYWSLSGPWQWRG 105
           +W    + CR   WS  G W WRG
Sbjct: 456 SWSWRGSWCRCGSWSWLGSWSWRG 479



 Score = 26.6 bits (56), Expect(2) = 3.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 73  WSLSGPWQWRGRGH 114
           WS  G W+WRG  H
Sbjct: 481 WSWCGSWRWRGSRH 494



 Score = 20.6 bits (41), Expect(2) = 3.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 49  SASCRAAYWSLSGPW 93
           S+ CR   WS  G W
Sbjct: 449 SSWCRRGSWSWRGSW 463


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,081,523
Number of Sequences: 237096
Number of extensions: 129106
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 76,859,062
effective HSP length: 36
effective length of database: 68,323,606
effective search space used: 1366472120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)