Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L04
         (172 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ582073-1|CAE46543.1|  518|Caenorhabditis elegans flavin monoox...    26   3.1  
AC006663-1|AAF39901.1|  518|Caenorhabditis elegans Flavin-contai...    26   3.1  
AL031633-22|CAB97238.1|  512|Caenorhabditis elegans Hypothetical...    25   9.5  
AJ582072-1|CAE46542.1|  512|Caenorhabditis elegans flavin monoox...    25   9.5  

>AJ582073-1|CAE46543.1|  518|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 518

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 25  PLTTWRC*SASCRAAYWSLSGPWQWRG 105
           PLT W+     C    + L+GP +W G
Sbjct: 461 PLTAWKVYFGPCVPYVFRLNGPNKWEG 487


>AC006663-1|AAF39901.1|  518|Caenorhabditis elegans
           Flavin-containing monooxygenasefamily protein 5 protein.
          Length = 518

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 25  PLTTWRC*SASCRAAYWSLSGPWQWRG 105
           PLT W+     C    + L+GP +W G
Sbjct: 461 PLTAWKVYFGPCVPYVFRLNGPNKWEG 487


>AL031633-22|CAB97238.1|  512|Caenorhabditis elegans Hypothetical
           protein Y39A1A.19 protein.
          Length = 512

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 25  PLTTWRC*SASCRAAYWSLSGPWQWRG 105
           PL  WR     C    + L+GP  W+G
Sbjct: 462 PLLAWRVYFGPCVPYVFRLNGPNTWQG 488


>AJ582072-1|CAE46542.1|  512|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 512

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 25  PLTTWRC*SASCRAAYWSLSGPWQWRG 105
           PL  WR     C    + L+GP  W+G
Sbjct: 462 PLLAWRVYFGPCVPYVFRLNGPNTWQG 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,715
Number of Sequences: 27780
Number of extensions: 19037
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)