Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L02
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    79   3e-16
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   1.2  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   4.9  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   8.5  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   8.5  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 79.4 bits (187), Expect = 3e-16
 Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
 Frame = +3

Query: 60  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVP-AASLPHVLRWYSHI 236
           M   D+ +  GL +LN +L ++S++ GY PSQAD  VF+ VG  P  A  P+  RWY  I
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 237 ASYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXX 416
           A+Y  A     ++ VS               +        LFGS                
Sbjct: 61  ATYDLATLPGTAKEVSAYGPEGAAAAEEDEID--------LFGS-DEEEDPEAERIKAER 111

Query: 417 LKAYADKKSKKPALIAKSSIILDVKPWDD 503
           +  Y  KK+ KP  + KS + LDVKPWDD
Sbjct: 112 VAEYNKKKAAKPKAVHKSLVTLDVKPWDD 140


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
          L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 68 QCHFSIRNLIYSSKPHGPATP 6
          Q H S+RN I SSKP   +TP
Sbjct: 17 QFHISVRNSIQSSKPLSNSTP 37


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 62  HFSIRNLIYSSKPHGPAT 9
           H  I +L+Y + PHGP +
Sbjct: 262 HHKIEDLVYHAYPHGPCS 279


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 228 CTTSKHEVGWQQVLCRLAQIL*YQLEKECIQTHNFFQLN 112
           C+T K E   +   CRL  I   + +  CI  +N   LN
Sbjct: 160 CSTCKFEKPARSKHCRLCNICVEKFDHHCIWINNCVGLN 198


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 229 ATSHRTPLLNAKPGQRELAH*QLELNPRPLLHPP 330
           AT+  TP   A P   E  + +   +P P+  PP
Sbjct: 118 ATASNTPQNEASPAATEAVNHERPASPPPVYRPP 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,650
Number of Sequences: 5004
Number of extensions: 29138
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)