Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L02
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   102   2e-22
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...    47   7e-06
Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p4...    29   2.5  
Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical pr...    28   3.3  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  102 bits (244), Expect = 2e-22
 Identities = 58/147 (39%), Positives = 77/147 (52%), Gaps = 1/147 (0%)
 Frame = +3

Query: 66  LGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASL-PHVLRWYSHIAS 242
           + DVK+  GL   N  LAE+++ +G+  S  D ++F  +G  P AS  P+V RWY+++AS
Sbjct: 2   VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVAS 61

Query: 243 YTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXXLK 422
           YT AERKTW+                  +         LFGS                L 
Sbjct: 62  YTDAERKTWA----------SAGGSAPAAAAADGDDFDLFGSDDEEEDAEKAKIVEERLA 111

Query: 423 AYADKKSKKPALIAKSSIILDVKPWDD 503
           AYA+KK+KK   IAKSS+ILDVKPWDD
Sbjct: 112 AYAEKKAKKAGPIAKSSVILDVKPWDD 138


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 25/49 (51%), Positives = 27/49 (55%)
 Frame = +3

Query: 357 LFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSIILDVKPWDD 503
           LFGS                L AYA KK+ K   IAKSS+ILDVKPWDD
Sbjct: 140 LFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDD 188


>Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical
           protein C36A4.6 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 90  GLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPA 197
           G+N+LNQ L + +Y +G+  +++ I      GK+ A
Sbjct: 117 GMNQLNQSLLQNTYATGWKHTRSAIAPIFSTGKMKA 152


>AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p450
           family protein 25A5 protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 90  GLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPA 197
           G+N+LNQ L + +Y +G+  +++ +      GK+ A
Sbjct: 93  GMNQLNQSLLQNTYATGWKHTRSAVAPIFSTGKMKA 128


>Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical
           protein F34D10.3 protein.
          Length = 147

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 467 LCNKSGFLRLFVSICLKTFFTDSGCFCILF 378
           L N SG  + ++ +CL  F TD+ CF +LF
Sbjct: 27  LDNSSGD-KQYIFLCLIVFATDAACFGVLF 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,956,473
Number of Sequences: 27780
Number of extensions: 167967
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)