Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L02
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    28   0.048
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    28   0.048
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   7.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 0.048
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 488 YIKDYRGLCNKSGFLRLFVSICLKTFFTDSGCF 390
           YI D+ G C K+  +  F+  CL+T+  ++  +
Sbjct: 268 YISDFVGSCRKTDQILYFIRGCLQTYLINASTY 300


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 28.3 bits (60), Expect = 0.048
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 488 YIKDYRGLCNKSGFLRLFVSICLKTFFTDSGCF 390
           YI D+ G C K+  +  F+  CL+T+  ++  +
Sbjct: 306 YISDFVGSCRKTDQILYFIRGCLQTYLINASTY 338


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  NELNQYLAERSYVSGYTPSQADIKVFEQVGK 188
           NE+NQ + E S +S         K+F+ + K
Sbjct: 95  NEINQLITECSAISDTNVHLKITKIFQCITK 125


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 120 ERSYVSGYTPSQ 155
           E SY++G TPS+
Sbjct: 285 ENSYLAGLTPSE 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,408
Number of Sequences: 438
Number of extensions: 2133
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)