Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_L01
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   1.5  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    24   3.5  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    23   4.7  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    23   6.2  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   6.2  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    23   8.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    23   8.2  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 180 CTRSP*QSARWLTATHNPCKIWLHH 106
           C +S  +S  WL   HN  +IW+ H
Sbjct: 407 CYKSFRESRTWLHFLHNFSRIWILH 431


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 129 DCGSQLATVQTVMVTGCSQDAKECV-LRKKQ*P 224
           DC SQL      M TG S+ AK+ V +R K  P
Sbjct: 719 DCKSQLNAYLMQMRTGLSEKAKDHVYVRSKTLP 751


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 117 KFYKDCGSQLATVQTVMVTGCSQDAKEC 200
           KF+     Q  T+ ++   GC++D K C
Sbjct: 49  KFHDPKKVQQCTLLSIKTGGCTEDCKYC 76


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 209 SQHALLSVLTAPGHHDSLHGG*LRPTIL-VKFGFTTDQKYCDTDKNQHF 66
           S++   S +    HH +LH   +  ++      F   +K+C+  K  HF
Sbjct: 663 SKNVTTSEVKQAHHHGNLHMMDMMKSLTDATSEFAFGEKFCEKHKGDHF 711


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 7   GANVRVVTTTLARV 48
           GA +R+VTTT AR+
Sbjct: 85  GAPIRIVTTTNARI 98


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 90  AVLLVGGEAKFYKDCGSQLATVQTVMVTGCSQDAKECVLRK 212
           A++++       + C     ++  VMVT C Q A++  L +
Sbjct: 405 AIVVLSTSGNTARLCSKYRPSIPIVMVTRCPQRARQSHLNR 445


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 220  YCFFRSTHSLAS*LHPV 170
            YCFFR  H+L S L  +
Sbjct: 1011 YCFFRLFHTLYSRLEEI 1027


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 966,192
Number of Sequences: 5004
Number of extensions: 15662
Number of successful extensions: 35
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)