Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K24
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    29   0.79 
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.79 
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   2.4  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.2  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   4.2  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    26   4.2  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    25   7.4  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.7  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   9.7  

>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 381 CLALFYLLKDFYVVKFSSFAWNGCCCYCYCWRSSTMTTTATNFQNCSMTTGTT 223
           CLA   + +     K S+      C   YCW  +  T+TA+ +    M+  TT
Sbjct: 580 CLACAIIQRSLERKKLSTPTQCSSCFQEYCWDGTLATSTASVYDPTVMSAATT 632


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 381 CLALFYLLKDFYVVKFSSFAWNGCCCYCYCWRSSTMTTTATNFQNCSMTTGTT 223
           CLA   + +     K S+      C   YCW  +  T+TA+ +    M+  TT
Sbjct: 580 CLACAIIQRSLERKKLSTPTQCSSCFQEYCWDGTLATSTASVYDPTVMSAATT 632


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 321 RQKKKTSPHKSPLKDKRELDREKIRDRSPLDKKKPVLPSTNDKIKNKDK 467
           ++KK    HK   KDK   D+++I   S  DKKK    S   K K K++
Sbjct: 71  KEKKSKHEHKKHKKDKPSADKDRI---SKKDKKK----SKKGKSKTKEE 112


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 192 HYSRYCSTLSLLFSFYALLISFYLYPT*PTVIYFEPFKTNT 70
           H++  C   SL  S  ALL+ + LYP     +   PF   T
Sbjct: 65  HFTIACYHYSLCLSLVALLLFYTLYPFQSITLPLMPFLEKT 105


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 486 VMGTSLVYLYF*FY-H*WMVVQASFCLMVNDPLSFPCLALF 367
           ++G SLV ++  F  H W +V     L + +   FPCL+L+
Sbjct: 116 IIGWSLVTIFTCFVRHYWSLVLTRLLLGICEGGFFPCLSLY 156


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 162 LLFSFYALLISFYLY 118
           +L+SFYALL  +Y+Y
Sbjct: 457 ILYSFYALLCCYYIY 471


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 378 DREKIRDRSPLDKKKPVLPSTNDKI 452
           DREK RD+   +K++  L S  DKI
Sbjct: 234 DREKSRDKKDGEKQRDNLASFEDKI 258


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 528 IHIGRLTLNVTRDHVHEIF 584
           I +  LT NVT++H+ EIF
Sbjct: 101 ILVENLTRNVTKEHIAEIF 119


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 327 KKKTSPHKSPLKD-KRELDREKIRDRSPLDKKKPVLPSTN 443
           K+KTS  +  L +   +LD+++I+       ++P LP+ N
Sbjct: 53  KEKTSSFEDELAEYASQLDQDEIKSSKDQQWQRPALPAIN 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,752
Number of Sequences: 5004
Number of extensions: 34368
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)