Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K24
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384...    30   1.4  
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087...    28   5.8  
12_02_0700 + 22259921-22260207,22264678-22264750,22265062-222658...    28   7.6  

>03_06_0670 +
           35434203-35434355,35436601-35436729,35436978-35438409,
           35438524-35439014
          Length = 734

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 324 QKKKTSPHKSPLKDKRELDREKIRDRSPLDKKKPVLPSTNDKIKNKDKQ 470
           +K K    +   KDK++ +R K + R   D+K+       DK K+K ++
Sbjct: 103 KKDKKDKERKEGKDKKDKERSKDKHRDKKDRKEKHKDKKKDKSKDKSRE 151


>04_04_1229 -
           31906854-31907300,31907986-31908181,31908631-31908756,
           31909962-31910329,31910680-31910835,31910968-31911168,
           31911230-31911375,31911439-31911865,31912527-31912627,
           31913197-31913254
          Length = 741

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 225 TIEMNYCPKNFHYSRYCSTLSLLFSFYALLISFYLY 118
           ++EM+ C K   Y+  CS LS+       L S +LY
Sbjct: 175 SLEMSLCKKRTEYNFPCSILSMALGCNISLTSLHLY 210


>12_02_0700 +
           22259921-22260207,22264678-22264750,22265062-22265802,
           22265849-22266424,22266505-22266957
          Length = 709

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 430 YHPLMIKLKIKINKRGPHDVKSASAHRLLVLHV 528
           +H +M+KL   +  RGPHD ++     ++V ++
Sbjct: 232 HHVVMLKLIQTLEPRGPHDAEARERATVIVAYI 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,628,084
Number of Sequences: 37544
Number of extensions: 198468
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)