Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K24
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75531-3|CAA99799.1| 172|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical pr... 31 0.96
AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical ... 31 0.96
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 30 1.3
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 30 1.7
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 30 1.7
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 30 1.7
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 30 1.7
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 29 2.2
AL117193-10|CAB60304.1| 337|Caenorhabditis elegans Hypothetical... 29 2.2
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 29 3.9
AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical ... 29 3.9
Z37983-3|CAA86056.1| 621|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 28 6.8
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 28 6.8
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 28 6.8
U41013-2|AAA82300.1| 557|Caenorhabditis elegans Hypothetical pr... 27 9.0
AF025452-1|AAB70944.1| 411|Caenorhabditis elegans C-type lectin... 27 9.0
AF025450-9|AAB70938.2| 409|Caenorhabditis elegans C-type lectin... 27 9.0
>Z75531-3|CAA99799.1| 172|Caenorhabditis elegans Hypothetical
protein C54D10.3 protein.
Length = 172
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -1
Query: 435 MVVQASFCLMVNDPLSFPCLALFYLLKDFYVVK--FSSFAWNGCCCYCYCWRSSTMTTTA 262
+V AS ND PCL + D Y+ + + CC Y S+T TTTA
Sbjct: 10 LVASASAQTCAND--QGPCLKMTVNTMDIYICPEGMACLTNSTCCEYADIQVSTTTTTTA 67
Query: 261 TNFQNCSMTTGTTIEMNYCPKN 196
+ C + ++ CPK+
Sbjct: 68 ASTSTCVDKVNPSTGVSDCPKS 89
>Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical
protein AH6.3 protein.
Length = 230
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 321 RQKKKTSPHKSPLKDKRELDREKIRDRSPLDKKKPVLPSTNDKIKNKDK 467
R K T K K+K+E+++EK +++ +K+ T +K K+KD+
Sbjct: 126 RPDKLTEEEKPDAKEKKEIEKEKTKEKEKTKEKE----KTQEKEKSKDE 170
>AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical
protein F49H12.5 protein.
Length = 257
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 321 RQKKKTSPHKSPLKDKRELDREKIRDRSPLDKKKPVLPSTNDKIKNKDKQ 470
+++KK ++K+E +K +D DKKK DK KDK+
Sbjct: 189 KEEKKDKKKDEKKEEKKEKKEDKKKDEKKKDKKKEDKKDKKDKKDKKDKK 238
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 321 RQKKKTSPHKSPLKDKRELDREKIRDRSPLDKKKPVLPSTNDKIKNKDKQ 470
++KK+ KDK++ D++ +D+ KK +DK K+K+
Sbjct: 205 KEKKEDKKKDEKKKDKKKEDKKDKKDKKDKKDKKDKKEKKDDKKSKKNKK 254
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 321 RQKKKTSPHKSPLKDKRELDREKIRDRSPLDKKKPVLPSTNDKIKNKDK 467
R++ P ++ K+K+ D+E+ R RSP D++ S + + + D+
Sbjct: 132 RKRISPPPSENREKEKQSRDKERRRSRSPRDRRGRATTSRSGRTSSSDR 180
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = +3
Query: 327 KKKTSPHKSPLKD-----KRELDREKIRDR--SPLDKKKPVLPSTNDKIKNKDKQ 470
KK+ SP KS +D K+E EK+ ++ SP K+ T+D++K+ K+
Sbjct: 1636 KKEKSPEKSATEDVKSPTKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKK 1690
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = +3
Query: 327 KKKTSPHKSPLKD-----KRELDREKIRDR--SPLDKKKPVLPSTNDKIKNKDKQ 470
KK+ SP KS +D K+E EK+ ++ SP K+ T+D++K+ K+
Sbjct: 1636 KKEKSPEKSATEDVKSPTKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKK 1690
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = +3
Query: 327 KKKTSPHKSPLKD-----KRELDREKIRDR--SPLDKKKPVLPSTNDKIKNKDKQ 470
KK+ SP KS +D K+E EK+ ++ SP K+ T+D++K+ K+
Sbjct: 1636 KKEKSPEKSATEDVKSPTKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKK 1690
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = +3
Query: 327 KKKTSPHKSPLKD-----KRELDREKIRDR--SPLDKKKPVLPSTNDKIKNKDKQ 470
KK+ SP KS +D K+E EK+ ++ SP K+ T+D++K+ K+
Sbjct: 1636 KKEKSPEKSATEDVKSPTKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKK 1690
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 321 RQKKKTSPHKSPLKDKRELDREKIRDRSPLDKK 419
R+ ++ S +SP KR+L RE R RSPL K
Sbjct: 130 RESRRRSESRSP-SPKRDLKREASRSRSPLPAK 161
>AL117193-10|CAB60304.1| 337|Caenorhabditis elegans Hypothetical
protein Y105C5A.17 protein.
Length = 337
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 318 NGCCCYCYCWRSSTMTTTATNFQNCSMTTGTTIEMNYCPKNFHYSRYCSTL 166
N CCC Y S M+ + T F + +T + I +N K F Y + S L
Sbjct: 218 NVCCCQGYLCNSG-MSFSKTEFSSLLLTVLSVIYINVFRKLFQYFLHISIL 267
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 584 STYGTVKTVEFPMDRLHPLNGRRYAY 661
S YG +K V+ P DR H R Y Y
Sbjct: 154 SIYGAIKNVDLPPDRFHNHVHRGYGY 179
>AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical
protein W08E12.2 protein.
Length = 120
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Frame = -1
Query: 318 NGCCCYCY-CWRSSTMTTTATNFQNCSMTT----GTTIEMNYCPKNFHYSRYCST 169
N C C C T+ N CS G +YCP NF YS C++
Sbjct: 40 NNCGCNGNNCGPQVTVVQVPNNNNGCSCNPCNGGGCAPRCSYCPNNFGYSSCCNS 94
>Z37983-3|CAA86056.1| 621|Caenorhabditis elegans Hypothetical
protein B0393.3 protein.
Length = 621
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 333 KTSPHKSPLKDKRELDREKIRDRSPLDKKKPVLP 434
K H P + KR+ +E+++ R + +KPV+P
Sbjct: 574 KILKHSRPSRPKRQAQKERVQQRRSGNIQKPVVP 607
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 321 RQKKKTSPHKSPLKDKRELDREKIRDR 401
++++K HK KD+ DREK R+R
Sbjct: 122 KKERKDKEHKKHKKDREHRDREKERER 148
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 324 QKKKTSPHKSPLKDKRELDREKIRDRSPLDKKKPVLPSTNDKIKNKDKQ 470
+KKK P + P + E D + D DKK DK K K+K+
Sbjct: 152 KKKKEKPVEKPEEPAVEEDSDGEGDEKDQDKKDKKKQKKKDKKKEKEKK 200
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 324 QKKKTSPHKSPLKDKRELDREKIRDRSPLDKKKPVLPSTNDKIKNKDKQ 470
+KKK P + P + E D + D DKK DK K K+K+
Sbjct: 152 KKKKEKPVEKPEEPAVEEDSDGEGDEKDQDKKDKKKQKKKDKKKEKEKK 200
>U41013-2|AAA82300.1| 557|Caenorhabditis elegans Hypothetical
protein T06C10.3 protein.
Length = 557
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 336 TSPHKSPLKDKRELDREKIRDRSPLDKKKPVLPSTNDKIKNK 461
+SP K P K ++E D++++ ++ ++K V K+K K
Sbjct: 46 SSPSKEPAKQEKEDDKKEVEEKKEIEKS--VEAKVEGKVKAK 85
>AF025452-1|AAB70944.1| 411|Caenorhabditis elegans C-type lectin
protein 2 protein.
Length = 411
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -1
Query: 279 TMTTTATNFQNCS----MTTGTTIEMNYCPKNFHYSRYCSTLSLLFSFYALLISFYLYPT 112
T+T +N C+ MT G NY P+N+ + YCS Y +L+ F + T
Sbjct: 290 TVTPVPSNESFCNSTVLMTPGIITSPNY-PQNYDNNVYCSYKLSTLGSYNILLEFTSFST 348
>AF025450-9|AAB70938.2| 409|Caenorhabditis elegans C-type lectin
protein 3 protein.
Length = 409
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -1
Query: 279 TMTTTATNFQNCS----MTTGTTIEMNYCPKNFHYSRYCSTLSLLFSFYALLISFYLYPT 112
T+T +N C+ MT G NY P+N+ + YCS Y +L+ F + T
Sbjct: 288 TVTPVPSNESFCNSTVLMTPGIITSPNY-PQNYDNNVYCSYKLSTLGSYNILLEFTSFST 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,453
Number of Sequences: 27780
Number of extensions: 195222
Number of successful extensions: 916
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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