Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K21
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.67 
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    28   0.89 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   3.6  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   3.6  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   4.7  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   6.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   6.2  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   8.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.3  

>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 167 DDKTTNIHQFNLSDLITRYI 226
           DDK TN H   LSDL   Y+
Sbjct: 362 DDKPTNFHDIRLSDLYAEYL 381


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 213 IKSLKLNWCIFVVLSSMFTFIINSIYRGI-YGKNYKYKISRTFKNFLSCLSVQCN 52
           +K ++   C  +++  +   ++ S  R + Y K   Y IS  F N L C    CN
Sbjct: 287 LKEIQPFKCPSIMVKDLENSLLQSNIRNVGYEKKNLYYISSAFSNLLHCRYFNCN 341


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 333 QLVLKVMNRCVNTLVIAVA*CALHNIFTGN 422
           QL+  ++NRC  + + AV   +L++  TGN
Sbjct: 418 QLISSLLNRCTLSSIQAVFLLSLYHFLTGN 447


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 457 INTTFMNTVSSLLPVKILCKAHHA 386
           I T   NT S +LP+ + C+ +HA
Sbjct: 407 IETLLENTHSHVLPILVACQTNHA 430


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -3

Query: 234 FSYMYLVIKSLKLNWCIFVVLSSMFTFIINSIYRGIYGKNYKYKISRTFKNFLSCL 67
           F+  YL+ +S  L+W  F+    +  F   +++  I+  ++     +T  N   CL
Sbjct: 74  FTCAYLLSQSSLLSWKFFLTAYFIGAFCNQNLFLAIHELSHNLGFKKTLYNRAYCL 129


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 132 GIYGKNYKYKISRTFKNF 79
           G+Y K Y+ KI +T +NF
Sbjct: 312 GVYDKEYEKKIEKTKRNF 329


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 134 LYIEFIIKVNIDDKTTNIHQFNLSDLITRYIYEK 235
           LY E    + I  KT  +H+F L D+++++  +K
Sbjct: 800 LYFEGSNLITIPGKTYPVHRFYLEDILSQFGNDK 833


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 308  LISMVVVPSACFKSNEQMCEYIS 376
            L S  ++P+ CF  + Q CEY++
Sbjct: 1085 LHSKELLPAICFNYDRQECEYLA 1107


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 162  FTFIINSIYRGIYGKNYKYKISRTFKNFLSCLSVQCNINC 43
            F F++  I    YG+ +K+         LSCL    NI C
Sbjct: 1302 FPFVLELIGEFYYGRGHKFLAKSYITRALSCLK---NIGC 1338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,269
Number of Sequences: 5004
Number of extensions: 45270
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)