Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K21
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0050 - 19245087-19245113,19245306-19245449,19245546-192456...    28   4.8  
08_02_0671 - 19890187-19890295,19891186-19891320,19891551-198919...    28   6.4  
10_08_0831 + 20898186-20899178,20899307-20899496,20899853-20900127     27   8.5  

>02_04_0050 -
           19245087-19245113,19245306-19245449,19245546-19245637,
           19245733-19245811,19245902-19245968,19246084-19246175,
           19246267-19246383,19246472-19246583,19246884-19246990,
           19247113-19247189,19247351-19247432,19247526-19247663,
           19248176-19248234,19249155-19249233
          Length = 423

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = -3

Query: 216 VIKSLKLNWCIFVVLSSMFTFIINSIYRGIYGKNYKYKISRTFKNFLSCLSVQCNI 49
           VI+  +    + ++LS+M+T I+N    G+Y  +++Y+IS       S  SV+C +
Sbjct: 173 VIRRYRYQLVVALLLSTMYTVILN----GVYVPDWEYQISGPGSTEKS-FSVRCGV 223


>08_02_0671 -
           19890187-19890295,19891186-19891320,19891551-19891917,
           19892909-19893044,19894924-19894974,19895053-19895134,
           19895801-19895853,19895989-19896065,19896234-19896273,
           19897666-19897767,19897989-19898031,19898127-19899288,
           19899902-19900271
          Length = 908

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -2

Query: 550 LVSFRITCMCEKCNDLTATTFICSNYFKHYYINTTFMNTVSSLLPVKIL 404
           LVS  I  +   C DL A    C+N F H Y+ T  M +  S+  VK L
Sbjct: 433 LVSDGIKEVINGCTDLIALEKPCTNAF-HLYLKTRPMPSTESIRRVKDL 480


>10_08_0831 + 20898186-20899178,20899307-20899496,20899853-20900127
          Length = 485

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 125 MGRITNIRYQGRLRIFCRVCLYSVTLTALLYMYIICV 15
           +GR+   R QG   + CRVC+ +   +AL      CV
Sbjct: 88  LGRLLAWRSQGGRDLMCRVCVVTALASALFTNDTCCV 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,446,046
Number of Sequences: 37544
Number of extensions: 216264
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)