Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K21
         (590 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    32   1.7  
AK024464-1|BAB15754.1|  575|Homo sapiens FLJ00057 protein protein.     30   5.3  
AF319995-1|AAM73554.1| 1087|Homo sapiens helicase B protein.           30   5.3  

>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
 Frame = -3

Query: 312 INKYYCLTWKKALENNFT*IFS*RYYFSYMYLVIKSLKLNWCIFVVLSS---MFTFIINS 142
           I+KY C+       + +T I    + ++Y+Y+ +  + +  CI V + S   M+T++   
Sbjct: 178 IHKYTCM---HMCIHMYTCIHRCIFIYTYVYICVY-IHIYICIHVCVYSYIHMYTYVYIH 233

Query: 141 IYRGIYGKNYKYKISRTFKNFLSCLSVQCNINCAIVHVHN 22
           +Y GI+   Y Y    T+     C+ V    +  I H HN
Sbjct: 234 VYIGIHMCVYSYMHRYTYVYIHICICVHIYTHIHI-HTHN 272


>AK024464-1|BAB15754.1|  575|Homo sapiens FLJ00057 protein protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -3

Query: 363 HICSLLLKQAEGTTTIEINKYYCLTWKKALEN 268
           HIC+L LK+ E  ++ ++NK+  LTW K + N
Sbjct: 126 HICALFLKECE-VSSDDVNKF--LTWVKEVSN 154


>AF319995-1|AAM73554.1| 1087|Homo sapiens helicase B protein.
          Length = 1087

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -3

Query: 363 HICSLLLKQAEGTTTIEINKYYCLTWKKALEN 268
           HIC+L LK+ E  ++ ++NK+  LTW K + N
Sbjct: 125 HICALFLKECE-VSSDDVNKF--LTWVKEVSN 153


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,935,618
Number of Sequences: 237096
Number of extensions: 1448855
Number of successful extensions: 5639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5636
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)