Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K20
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   3.5  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   6.1  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   6.1  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   6.1  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   8.1  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   8.1  

>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 481 VSQRRVAGDRWQKIAAAVPEKTTEECM 561
           V Q  + G ++ KIA AVP K ++EC+
Sbjct: 260 VQQFILHGKKFGKIAEAVPGKNSKECV 286


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 502 GDRWQKIAAAVPEKTTEECM 561
           GD W +IA  V  +T E+C+
Sbjct: 266 GDDWNQIALHVGSRTKEQCL 285


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 537 GNSSGDLLPTVTGNPPLGYLASAVSSAFC 451
           GN    LLPTV      GY+AS ++   C
Sbjct: 368 GNDLSALLPTVINVRRGGYIASIIALCMC 396


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 568 TAAYIPPLSSREQQRRSSANGHRQPA 491
           T+AY+P  S+ EQ++RSS      P+
Sbjct: 211 TSAYLPGSSTDEQEKRSSVTLASMPS 236


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 287 PAHRVRYALPPLRTAARVLLHEPRELRQIVVRP 189
           PA  V    PP++T+     + P+  R + VRP
Sbjct: 325 PAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRP 357


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 505 DRWQKIAAAVPEKTTEECM 561
           D W K+A+ V  K+ EEC+
Sbjct: 310 DDWAKVASHVNTKSVEECI 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,763
Number of Sequences: 5004
Number of extensions: 43353
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)