Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K18
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361...    31   0.35 
11_06_0652 - 25906001-25906237,25906345-25906830                       27   5.7  
02_05_0309 + 27762613-27763070,27763940-27764060,27764168-277642...    27   5.7  

>09_04_0634 - 19132916-19134033,19134716-19135915,19136002-19136106,
            19136273-19136315,19137622-19137740,19138074-19138172,
            19138264-19138480
          Length = 966

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 175  SNANQQEKASPEPWEPSITCHSL 107
            +NA ++ KA  +PW P I CHS+
Sbjct: 943  NNAEKKSKARKQPWMPFICCHSV 965


>11_06_0652 - 25906001-25906237,25906345-25906830
          Length = 240

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -2

Query: 452 NHACCCIILQFSS*LCKMHPWRVASKVYRCQRSVCNILERLSRARDSRVQKLIEFSAKHA 273
           N A C  + + +  + K+ P   +  V R   +  NIL RL  A D  +Q L+E      
Sbjct: 24  NAASCKELAERAQQVAKILPDSNSKAVARGDATAANILRRLRGALDDALQ-LVESCQSGG 82

Query: 272 GCV 264
           GC+
Sbjct: 83  GCL 85


>02_05_0309 +
           27762613-27763070,27763940-27764060,27764168-27764287,
           27764633-27764863,27764964-27765503
          Length = 489

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -1

Query: 261 NIPRSLNSFPVALFGKLPLTLETSYVTR-----PAMLTSKKKLAQNHG 133
           ++PR   S  V++FG  P +++ SY  R       +LT +KKL Q  G
Sbjct: 144 DVPRPAPSASVSVFGVSPTSMQCSYDNRGNSVPTILLTMQKKLYQLGG 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,887,894
Number of Sequences: 37544
Number of extensions: 222956
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)