Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K17
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 64 1e-11
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.76
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.8
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.8
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 27 3.1
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 3.1
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.0
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 5.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.3
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 9.3
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 64.5 bits (150), Expect = 1e-11
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = +3
Query: 450 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVLQ 629
+ +KQ+LGE L+P + L+GKITGMLLE+ NSELL +LE +L +V+EA+ VLQ
Sbjct: 583 ESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVLQ 642
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 28.7 bits (61), Expect = 0.76
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 139 NHL*DQALKHLHRLTQICNHP-TVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHL 315
+ L D A + + +C+ TVL Q R+ +L+ + ++ L+ ++ HL
Sbjct: 115 SRLCDGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHL 174
Query: 316 LLLKAAVQLVINTLQICEILQL 381
L L V VI T E++QL
Sbjct: 175 LRLVEQVNAVIGTFYTGELMQL 196
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.5 bits (58), Expect = 1.8
Identities = 36/127 (28%), Positives = 45/127 (35%), Gaps = 4/127 (3%)
Frame = +3
Query: 18 GQIFQPSSAGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQX 197
G I PS+ G TI YG P TP A R ST PASA +
Sbjct: 252 GPISVPSAPYGRASSTIAEVSPMYGSHAAPYAS-TPS-AAVGSSRGST--PASATVPISP 307
Query: 198 XXXXXXXXXXXXXXXTSLGARPITGQQGVAGTA----GSIRAPLVTQSSRPAGYKYTANM 365
A P G G+ ++ GSIR+P +T +S A T N+
Sbjct: 308 ARGFPTTSAYNPAPPAYGMANPAYGSTGIRSSSIPSSGSIRSPSLTTTSAQATTNATNNI 367
Query: 366 RNPPAPQ 386
A Q
Sbjct: 368 TTTTAAQ 374
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 161 SNTCIGLRKYATTLPSSTKS-SNTGCITYFSRSKTNHRTT 277
S+T GL ++T+PSST+S SN+ + S SK + +T
Sbjct: 987 SSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSST 1026
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 3.1
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +1
Query: 160 LKHLHRLTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHLLL--LKAA 333
LK L RL++ICN +L E ++ L L + Q+N +L + Q + LL +
Sbjct: 488 LKILTRLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRG 547
Query: 334 VQLVINTLQICEILQLRSL 390
Q + Q E L+L L
Sbjct: 548 CQKAVIVSQYKETLELIEL 566
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/71 (25%), Positives = 25/71 (35%)
Frame = +2
Query: 92 SSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKTNHR 271
S+TN N YT P T +G +PS S G S + N+
Sbjct: 61 STTNPLNLLYTQTQQPARSTTPFLLNPVGSSPGKLPVPSRNNSYLQGTAESNSGNFANNS 120
Query: 272 TTRCCWHGWIN 304
+ CW+ N
Sbjct: 121 ISNNCWNSAYN 131
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 80 TLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCIT 241
T + +++NA N+T+ +T T +N+ T LP+S+KS T T
Sbjct: 222 TCIVNASNATNSTFWLNGTNSTNGTNSTNSTSTTSHSLTKLPTSSKSLTTSKTT 275
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = +2
Query: 59 SHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCI 238
S +S ++ L SST +++++ TP +T + S++ + + SS+KSS+
Sbjct: 119 SSSSSSSSSLVSSTTSSSSSATP----STTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSS 174
Query: 239 TYFSRSKTNHRTT 277
S T+H+++
Sbjct: 175 RTTSHRTTSHKSS 187
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 68 TSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNT 229
TS + SST +T T +C T+ +++T I T P+ST SS+T
Sbjct: 569 TSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPI-------TSPNSTSSSST 615
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 68 TSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCIT 241
TS T++ +STN +TT+T T+ T S+T +A+ S + T T
Sbjct: 634 TSSTSIPLTSTNRTSTTFT---SSTSISTSSSSTATSSTSFASESSSFYSNVTTSSST 688
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 492 IQRMHPDLAGKITGMLLEID-NSELLHMLEHGESLKAKVDEAV 617
+QR++P ++ G LL+ID + EL+ L + VDE V
Sbjct: 801 VQRINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELV 843
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 258 RPITGQQGVAGTAGSIRAPLVTQSSRPAGYKYTANMRNPPAPQP 389
RPI + + PL SSR + AN + PP P P
Sbjct: 273 RPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 154 QALKHLHRLTQICNHPTVLH 213
Q LK + L +ICNHP +L+
Sbjct: 557 QPLKAIGLLKKICNHPDLLN 576
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,365
Number of Sequences: 5004
Number of extensions: 60041
Number of successful extensions: 209
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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