Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K17
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.7  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   7.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 178 LTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHLLLLKA 330
           L+ I NH  +L ++ +      L+  QD+ +  +V +A++  ++  L L A
Sbjct: 244 LSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLA 294


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
          opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 49 PPALLGWNI 23
          PP LLGWN+
Sbjct: 17 PPRLLGWNV 25


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 178 LTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLLARLDQSVHLLLLKA 330
           L+ I NH  +L ++ +      L+  QD+ +  +V +A++  ++  L L A
Sbjct: 244 LSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLA 294


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 576 LTYEEAQNCQFLKAYQLF 523
           L +E AQ+C+ + A +LF
Sbjct: 743 LEFEAAQDCELVTAGELF 760


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 160 VLGLTGGWAVHRGVGRICGICAGP*KRCAGGMVGTKYPP 44
           V GL G  + H GVGR  G      K  A G++   + P
Sbjct: 138 VQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLHDP 176


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 160 VLGLTGGWAVHRGVGRICGICAGP*KRCAGGMVGTKYPP 44
           V GL G  + H GVGR  G      K  A G++   + P
Sbjct: 138 VQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLHDP 176


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 160 VLGLTGGWAVHRGVGRICGICAGP*KRCAGGMVGTKYPP 44
           V GL G  + H GVGR  G      K  A G++   + P
Sbjct: 138 VQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLHDP 176


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 68  TSCTTLLWSSTNAANT 115
           T CTT  WS    A T
Sbjct: 199 TCCTTXWWSXXTVAXT 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,998
Number of Sequences: 438
Number of extensions: 4442
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)