Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K16
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    31   0.82 
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228...    31   1.1  
04_04_1377 - 33064906-33065607                                         26   1.9  
02_02_0310 - 8842286-8843314                                           28   5.8  
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    28   5.8  
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877...    28   7.7  
08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883...    28   7.7  

>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 142 HPPETLQDHLH*GHRALPRPWHPSFPLRPKTKRR 243
           HPP  +Q H H  H+ LP P  P  P  P  + R
Sbjct: 70  HPPPRVQHHHHHHHQQLPAPTPPPPPPPPLPQHR 103


>04_03_0905 -
           20722090-20722207,20722314-20722395,20722698-20722851,
           20723026-20723089,20724282-20724404,20725326-20725452,
           20725541-20726171
          Length = 432

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 321 RAEWGRQWGW*CRAVRRVS*PKRRRGSSLRFGPER 217
           R+E GR+W W C    R    +RRRG     G  R
Sbjct: 179 RSEAGRRWRWRCSETARAPPQERRRGGRCTCGVAR 213


>04_04_1377 - 33064906-33065607
          Length = 233

 Score = 26.2 bits (55), Expect(2) = 1.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 287 HHHPHCRPHSALQ 325
           HHHPH +PH   Q
Sbjct: 187 HHHPHLQPHGEEQ 199



 Score = 22.2 bits (45), Expect(2) = 1.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 272 RRTARHHHPHCRPH 313
           R+   HHH H  PH
Sbjct: 178 RQKHHHHHHHHHPH 191


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 209 HHSRSGPKRREEPRLRFGQETRRTAR-HHHPHCRPHSALQTRSLLHQIQD 355
           HH     +  EE   R+ ++   ++R HHH  CR H      S  H+ +D
Sbjct: 269 HHKDDDERELEEMARRWIRKALMSSRMHHHRGCRFHHHHHHLSFRHRAED 318


>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +2

Query: 188  HSRARGTHHSRSGPKRREEPRLRFGQETRRTARHHHPHCRPHSALQTRS 334
            H R+R    S       E  ++R G+   +T  H H H   H     RS
Sbjct: 1282 HRRSRSLEESSDDAAAGEYEKVRNGKRPHKTGHHRHHHRHHHHHHDHRS 1330


>08_02_1402 -
           26786011-26786128,26786263-26786516,26787505-26787732,
           26788920-26789759
          Length = 479

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 254 RFGQETRRTARHHHPHCRPHSALQTRS 334
           +  +  RR A   HPH +PHS L  R+
Sbjct: 181 QLAEMARREAETAHPHTQPHSDLSPRT 207


>08_02_1345 -
           26286448-26286679,26287483-26288038,26288068-26288358,
           26288953-26290516
          Length = 880

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 93  HHQNLKNSAHK*SAVEPSPRNTTRSSS 173
           HH   K+S H  + V PSPR  T  SS
Sbjct: 821 HHGRGKDSGHFVAYVRPSPRQQTNGSS 847


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,057,580
Number of Sequences: 37544
Number of extensions: 172514
Number of successful extensions: 661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)