Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K16
         (665 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC119676-1|AAI19677.1|  126|Homo sapiens family with sequence si...    32   2.1  
AL162731-3|CAI13100.1|  126|Homo sapiens family with sequence si...    32   2.1  
AL953889-4|CAI16776.1|  125|Homo sapiens family with sequence si...    31   2.8  
AY396741-1|AAR91619.1| 2850|Homo sapiens hornerin precursor prot...    31   3.7  
AL589986-3|CAH70026.1| 2850|Homo sapiens hornerin protein.             31   3.7  
BT007415-1|AAP36083.1|  494|Homo sapiens splicing factor, argini...    30   8.5  
BC002781-1|AAH02781.1|  494|Homo sapiens splicing factor, argini...    30   8.5  
AL590729-1|CAI14326.1|  494|Homo sapiens splicing factor, argini...    30   8.5  
AL357500-1|CAH71635.1|  494|Homo sapiens splicing factor, argini...    30   8.5  

>BC119676-1|AAI19677.1|  126|Homo sapiens family with sequence
           similarity 27, member E1 protein.
          Length = 126

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +2

Query: 182 TGHSRAR-----GTHHSRSGPKRREEPRLRFGQETRRTARHHHPHCRPHS 316
           TGH R R     GTH      + R   RLR  +E R   RH H H + H+
Sbjct: 62  TGHIRPRTHTHTGTHTQTDRERERNTQRLR-DRERRENGRHTHIHTQTHT 110


>AL162731-3|CAI13100.1|  126|Homo sapiens family with sequence
           similarity 27, member E1 protein.
          Length = 126

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +2

Query: 182 TGHSRAR-----GTHHSRSGPKRREEPRLRFGQETRRTARHHHPHCRPHS 316
           TGH R R     GTH      + R   RLR  +E R   RH H H + H+
Sbjct: 62  TGHIRPRTHTHTGTHTQTDRERERNTQRLR-DRERRENGRHTHIHTQTHT 110


>AL953889-4|CAI16776.1|  125|Homo sapiens family with sequence
           similarity 27, member E2 protein.
          Length = 125

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = +2

Query: 182 TGHSRAR-----GTHHSRSGPKRREEPRLRFGQETRRTARHHHPHCRPH 313
           TGH R R     GTH      + R   RLR  +E R   RH H H + H
Sbjct: 61  TGHIRPRTHMHTGTHTQTDRERERNTQRLR-DRERRENGRHTHIHTQTH 108


>AY396741-1|AAR91619.1| 2850|Homo sapiens hornerin precursor protein.
          Length = 2850

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 179  GTGHSRARGTHHSRSGPKRREEPRLRFGQETRRTARH 289
            G+GHS   G H SRSG   R E   R G  +R ++R+
Sbjct: 1656 GSGHSSGYGQHGSRSGQSSRGE---RHGSSSRSSSRY 1689


>AL589986-3|CAH70026.1| 2850|Homo sapiens hornerin protein.
          Length = 2850

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 179  GTGHSRARGTHHSRSGPKRREEPRLRFGQETRRTARH 289
            G+GHS   G H SRSG   R E   R G  +R ++R+
Sbjct: 1656 GSGHSSGYGQHGSRSGQSSRGE---RHGSSSRSSSRY 1689


>BT007415-1|AAP36083.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 191 SRARGTHHSRSGPKRREEPRLRFGQETRRTARHHHPHCRPHSALQTRS 334
           SR+R    SRS  + R + R R  +E  R+        R HSA ++RS
Sbjct: 220 SRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRS 267


>BC002781-1|AAH02781.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 191 SRARGTHHSRSGPKRREEPRLRFGQETRRTARHHHPHCRPHSALQTRS 334
           SR+R    SRS  + R + R R  +E  R+        R HSA ++RS
Sbjct: 220 SRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRS 267


>AL590729-1|CAI14326.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 191 SRARGTHHSRSGPKRREEPRLRFGQETRRTARHHHPHCRPHSALQTRS 334
           SR+R    SRS  + R + R R  +E  R+        R HSA ++RS
Sbjct: 220 SRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRS 267


>AL357500-1|CAH71635.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 191 SRARGTHHSRSGPKRREEPRLRFGQETRRTARHHHPHCRPHSALQTRS 334
           SR+R    SRS  + R + R R  +E  R+        R HSA ++RS
Sbjct: 220 SRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRS 267


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,220,872
Number of Sequences: 237096
Number of extensions: 911619
Number of successful extensions: 3386
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3342
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)