Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K16
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55372-2|AAA98001.1|  980|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U23179-1|AAY55860.1|  334|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U55372-2|AAA98001.1|  980|Caenorhabditis elegans Hypothetical
           protein C02G6.1 protein.
          Length = 980

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 206 THHSRSGPKRREEPRLRFGQETRRTARHHHP 298
           +HH+   P++ E     FGQ+ R + ++ HP
Sbjct: 457 SHHALHLPEKNEYIATNFGQKPRESVKNEHP 487


>U23179-1|AAY55860.1|  334|Caenorhabditis elegans Hypothetical
           protein C27D6.11 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 267 KPDEQPDITIPTAAPTQPSKPE 332
           KPDE P +  P+ A T P+ P+
Sbjct: 303 KPDEHPKLPTPSTATTTPTGPQ 324


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
 Frame = +2

Query: 185 GHSRARGTHHSRSGPKRREEPRLRFGQETRRTARH-HHPHCRPH 313
           GH    GTHH   G           G+     A H HH H   H
Sbjct: 540 GHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSH 583


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,699,336
Number of Sequences: 27780
Number of extensions: 124063
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)