Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K15
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 142 2e-35
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 141 4e-35
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 25 4.3
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 25 5.7
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 5.7
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi... 24 7.6
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 24 7.6
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 24 10.0
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 24 10.0
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 24 10.0
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 10.0
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 142 bits (344), Expect = 2e-35
Identities = 68/123 (55%), Positives = 92/123 (74%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 208 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 387
W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R GRP+ R++ +
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116
Query: 388 AYR 396
YR
Sbjct: 117 GYR 119
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 141 bits (341), Expect = 4e-35
Identities = 69/123 (56%), Positives = 91/123 (73%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 208 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 387
W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R GRP+ R + D +
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-A 115
Query: 388 AYR 396
YR
Sbjct: 116 GYR 118
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 247 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 351
IEYL + PP + P L + E + G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 5.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -3
Query: 147 VRDLLEIWMFGCMVVFLSYHDSLLE 73
+ + +IW FGC + + +H S E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 280 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 387
P I P ++ V TVR G+ PD P+ + R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826
>SPBC18E5.05c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 7.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 228 PVKMPPCELFLNISS 184
P +PPCE+FL+ +S
Sbjct: 140 PSYLPPCEVFLDFTS 154
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 7.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 240 IC*IPVKMPPCELFLNISSRFK*LHSFDHL 151
+C +P++ P C L L +S+ S+ HL
Sbjct: 318 VCTLPIECPSCSLVLILSTHL--ARSYHHL 345
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 218 CLHANCSLTYPLDLSDCIALI 156
CLH N SLT+P S+ ++
Sbjct: 368 CLHLNASLTHPDSKSEASEVV 388
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 64 EYLFKEGVMVAKKDYHAPKHPDLEK 138
E L G +VA DY A HPD+E+
Sbjct: 99 ERLSALGNIVACNDYVALVHPDIER 123
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 23.8 bits (49), Expect = 10.0
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -1
Query: 326 VSVRTDLFRVAGTISGGKCRKILRYSIPSFVKYQ*KCLHANCSLTYPLDLSDCI 165
+ V+T L R+A + Y+I + V + + +H+ T+ LD+ D +
Sbjct: 4 IHVKTALSRLADKYLQNSKNPSVPYTIETIVSFFQEIIHSISPDTFQLDIDDIL 57
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 90 HDSLLEEVLIDRNTVL-FWHQHLGQPTFPS 4
H LL+ D + + F HQH G+P PS
Sbjct: 259 HIDLLDHHFCDLSEISKFNHQHSGKPDHPS 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,864
Number of Sequences: 5004
Number of extensions: 31141
Number of successful extensions: 96
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -