Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K15
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 142 7e-35
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 142 7e-35
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 136 6e-33
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 31 0.44
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 0.44
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 0.77
02_01_0462 + 3332464-3332470,3333606-3335806 27 4.1
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 27 5.5
05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432... 27 7.2
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 26 9.5
08_01_0250 - 2053568-2054021,2054413-2054801 26 9.5
05_04_0305 + 20052813-20053996,20055774-20055861,20056470-200565... 26 9.5
02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608 26 9.5
01_06_0739 - 31601656-31602233,31602777-31602906 26 9.5
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 142 bits (345), Expect = 7e-35
Identities = 69/125 (55%), Positives = 91/125 (72%), Gaps = 3/125 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 208 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAE 378
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 379 DRSAY 393
DR +
Sbjct: 120 DRPRF 124
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 142 bits (345), Expect = 7e-35
Identities = 69/125 (55%), Positives = 91/125 (72%), Gaps = 3/125 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 208 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAE 378
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 379 DRSAY 393
DR +
Sbjct: 120 DRPRF 124
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 136 bits (329), Expect = 6e-33
Identities = 65/125 (52%), Positives = 89/125 (71%), Gaps = 3/125 (2%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
M++ K+NR I +YLF EGV+ AKKDY+ KHP ++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 208 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGAVG-RPDAPARTAE 378
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + G G RP P R
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEG 119
Query: 379 DRSAY 393
DR +
Sbjct: 120 DRPRF 124
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.7 bits (66), Expect = 0.44
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 365 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKI 261
A A G P P + VR L+ T GG CR +
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRGV 37
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 0.44
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 58 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 234
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 235 TNEGIE-YLRIFLHLP 279
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 29.9 bits (64), Expect = 0.77
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +1
Query: 157 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 327
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 328 VR--RGA---VGRPDAPARTAED 381
R +G+ + +P PA + +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 176 LNLEDMLRNSSHGGIFTGI*QMRVLNTLEFSCTYLL 283
L +M RN +GGI I + V+ +L+ SC LL
Sbjct: 575 LQFLNMSRNVLYGGIPNDIGHLHVVESLDLSCNRLL 610
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 46 NRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP 144
++VS++ +L GV+ AK YH + KIP
Sbjct: 107 SKVSVHLFLHSTGVIAAKFQYHQKLVDAVHKIP 139
>05_04_0080 -
17742425-17742578,17742855-17743038,17743202-17743273,
17743343-17743469,17743915-17744135,17744234-17744387
Length = 303
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 58 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 234
+Y+ L +G +VA KK AP+ E++ L I + GY +E Y YL
Sbjct: 98 VYKGLLLDGSVVAIKKRIGAPRQEFAEEVRKLSEINHRNIVTLIGYCQEGGLQMLVYEYL 157
Query: 235 TNEGI 249
N +
Sbjct: 158 PNGSV 162
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 26.2 bits (55), Expect = 9.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 297 NPEEVSAYRDSTSWCSWQA 353
NP+E+S++ +T+ CSW +
Sbjct: 20 NPDELSSWLPATNCCSWDS 38
>08_01_0250 - 2053568-2054021,2054413-2054801
Length = 280
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -1
Query: 389 ADLSSAVRAGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKILRYSIPSFV 234
+DL++ RAG ++ R + L + G +SGG C L + V
Sbjct: 67 SDLAAKARAGGGFATSSAGRGIDAFYGLAQCRGDVSGGDCDACLAQAAKQMV 118
>05_04_0305 +
20052813-20053996,20055774-20055861,20056470-20056522,
20056585-20056615
Length = 451
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 389 ADLSSAVRAGASGLPTAPRRTVSVRTDLFRVAG 291
AD+S+ VRA + L + P RT+ + D R G
Sbjct: 86 ADISATVRAFSRILASDPARTLQPKLDYLRSVG 118
>02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608
Length = 276
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 37 PKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP-----NLQVIKAMQSLKSRG 189
P R+S Y+ + + MV DY P DL+ + +L + ++ +K++G
Sbjct: 144 PSAGRISGYDMVMQSWEMVCDADYEFPLQIDLQDVEVHVRGDLGYVTCLELVKTKG 199
>01_06_0739 - 31601656-31602233,31602777-31602906
Length = 235
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 28 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP-----NLQVIKAMQSLKSRG 189
++ P R+S Y+ + + MV DY P + DL+ + +L + ++ +K++G
Sbjct: 146 VIHPAAGRISGYDVVMQSWEMVCGADYEFPLNIDLKNVEVHVHGDLGYVTCLEVVKTKG 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,701,090
Number of Sequences: 37544
Number of extensions: 201201
Number of successful extensions: 630
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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