Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_K15
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   134   2e-32
Z68749-4|CAA92959.2|  179|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF022976-9|AAC69088.2|  404|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   6.5  
Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  134 bits (325), Expect = 2e-32
 Identities = 68/123 (55%), Positives = 82/123 (66%)
 Frame = +1

Query: 28  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 207
           M +PK +   IYEYLF EGV VAKKD++A  HP++E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 208 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 387
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDRE 119

Query: 388 AYR 396
           AYR
Sbjct: 120 AYR 122


>Z68749-4|CAA92959.2|  179|Caenorhabditis elegans Hypothetical
           protein F56H11.2 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 138 LLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGQP-TFP 7
           L+ + +FG ++ F++Y+ S   +  +DR TV     H+  P +FP
Sbjct: 65  LVGVMIFGAVINFVNYYKSKKRQKELDRMTVESLLAHMALPESFP 109


>Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical
           protein C03D6.5 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +1

Query: 118 KHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPA 297
           +HPD+ KIP   ++     L    Y  ++F   +  W++ NE  +   +  + P + +  
Sbjct: 78  EHPDISKIPVEDIVGVSVLLLRCKYNDQEFI--NMGWFVANEYTDE-ELKENPPAKPLIE 134

Query: 298 TLKRSVRTETVR 333
            L R + TE +R
Sbjct: 135 KLSRKIETEDLR 146


>Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical
           protein T13F3.3 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 287 ISGGKCRKILRYSIPSFVKYQ*KCLHANCSLTYPLDLSDC 168
           +S G C    R S+ S +KYQ K     C + Y LD   C
Sbjct: 28  LSCGACASFFRRSVVSKIKYQCKDGKKRCQIRY-LDRHFC 66


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
           protein ZK512.3 protein.
          Length = 1418

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 200 SLTYPLDLSDCIALITWRLGIFSRSG 123
           S  YPL L+DC  LIT +L + S SG
Sbjct: 293 SQLYPLGLADCYTLIT-KLLVSSNSG 317


>AF022976-9|AAC69088.2|  404|Caenorhabditis elegans Hypothetical
           protein R11G11.14 protein.
          Length = 404

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 55  KHGFVLASTSWTTNFP 8
           +HG + AST WT N P
Sbjct: 79  QHGLLCASTDWTMNLP 94


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 142 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 312
           P +QV+  +  +    ++ E      F W+ T+  I  + +F+  PP  +I+   LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311


>Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical
           protein C14H10.3 protein.
          Length = 830

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 129 IWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGQP 16
           +W F C+ V +S      + +L+ R    F+ QH+ +P
Sbjct: 10  LWAFACLSVSISRRSEKGKCMLVPRERRHFFVQHVSRP 47


>U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical
           protein F20D12.1b protein.
          Length = 867

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 85  VMVAKKDYHAPKHPDL-EKIPNLQ 153
           + V+  DY+APK P+  +K PNL+
Sbjct: 285 ITVSDVDYNAPKDPEFRQKYPNLK 308


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 85  VMVAKKDYHAPKHPDL-EKIPNLQ 153
           + V+  DY+APK P+  +K PNL+
Sbjct: 448 ITVSDVDYNAPKDPEFRQKYPNLK 471


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 112 APKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 243
           AP    +  +PNL   + ++S    GY+      + FYWY+ +E
Sbjct: 16  APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,994,950
Number of Sequences: 27780
Number of extensions: 174003
Number of successful extensions: 493
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)