Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_K14
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 200 1e-52
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 200 1e-52
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 29 0.60
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 1.4
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.4
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 4.2
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 25 5.6
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 5.6
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 7.3
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 7.3
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 9.7
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 9.7
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 200 bits (488), Expect = 1e-52
Identities = 97/152 (63%), Positives = 112/152 (73%), Gaps = 1/152 (0%)
Frame = +1
Query: 43 GLSSWYRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVY 222
G+ + R F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VY
Sbjct: 6 GIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVY 65
Query: 223 NVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKV 402
NVT ++GV++ K V R + KR+N+RIEHVKHSKCRQDFL RVK NE KEAKA GK
Sbjct: 66 NVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKT 125
Query: 403 VNLKRQPAPPKAAHIVSGA-EKPVLLAPIPYE 495
V L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 126 VQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 200 bits (487), Expect = 1e-52
Identities = 97/152 (63%), Positives = 112/152 (73%), Gaps = 1/152 (0%)
Frame = +1
Query: 43 GLSSWYRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVY 222
G+ + R F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VY
Sbjct: 6 GIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVY 65
Query: 223 NVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKV 402
NVT ++GV++ K V R + KR+N+RIEHVKHSKCRQDFL RVK NE KEAKA GK
Sbjct: 66 NVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKT 125
Query: 403 VNLKRQPAPPKAAHIVSGA-EKPVLLAPIPYE 495
V L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 126 VQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 113 VESGIVPCVRNLRANKSLYHDDNPWSLSYFSLVS 12
+ SGIVP R ++ + HD + SL +F++ S
Sbjct: 373 IASGIVPLSAFTRKHEDMLHDSDALSLKHFAITS 406
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 19 RLKYDKLQGLSSWYRD--LFARRFRTHGTIP 105
R Y+ L ++SWYRD L+ R +G +P
Sbjct: 1147 RFLYEVLYDITSWYRDKILYERECLANGALP 1177
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 240 SRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 377
+R+ R + R+ PT + P + + V LPQ+ ++K VE
Sbjct: 543 ARKSRARGPVRRPPTSVNTKPSFSVSGIDVFLNLPQSSVMKKKGVE 588
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 378 LQQPFVLLDALEEVLPALGVLHVL 307
L+ PF+LL + E+LP + VL
Sbjct: 1708 LENPFILLSEVSEILPETPIQEVL 1731
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 10 FETRLKYDKLQGLSSWYRDLFARRFRT-HGTI--PLSTYMKVY 129
F+ K K +GL+++YR LF F T H I PL Y K +
Sbjct: 234 FDAFRKIYKYEGLAAFYRGLFPSLFGTLHVGIQFPLYEYFKSF 276
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 277 ILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGK 399
IL K +NI++EH+ S Q L +E+ EA GK
Sbjct: 808 ILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGK 846
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 47 YRRGTGTCSPEDSAHMEL 100
Y RGT TC P + H EL
Sbjct: 296 YIRGTITCKPAEGNHREL 313
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +3
Query: 171 TKGYATQSIPR*DRACLQCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQA 350
TK +SIP + Q R S ++ + +Q + HQ P ++++Q P+A
Sbjct: 768 TKHLRKESIPSKQPSGGQQLRQESLPSQQSSESKQ--STQHQQPVEVQKSIQSDVSAPKA 825
Query: 351 RQGERKAV 374
++ K V
Sbjct: 826 KEVSEKPV 833
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 379 EAKAAGKVVNLKRQPAPPKAAH 444
+ KA K+ + +QP+PP A H
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEH 365
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 346 KRVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGAEKP 468
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 9.7
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = +1
Query: 127 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 279
Y VGD VD+ NG V M ++ + TG+V N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 280 LPKRINIR----IEHVKHSKCR-QDFLKRVKEN 363
P +N++ ++ ++ + + DFLK K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,152
Number of Sequences: 5004
Number of extensions: 42734
Number of successful extensions: 143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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